Full BLAST raw output including alignments follows below the summary table
| Hit Name |
Hit Start |
Hit End |
HSP Length |
HSP Score |
HSP Significance |
| PHCA:PHYCA_504703:PHYCA_504706:scaffold_9:509317:514737 | 2474 | 3124 | 232 | 553 | 3e-63 |
| PHSO:PHYSO_486521:PHYSO_296552:scaffold_2:5418027:5419042 | 731 | 1015 | 95 | 195 | 5e-16 |
| PYAP:PYAP_20399:PYAP_20400:scaffold_351:4434:9231 | 3117 | 3554 | 150 | 118 | 1e-05 |
| PHCA:PHYCA_544885:PHYCA_564860:scaffold_16:404592:405441 | 220 | 447 | 78 | 78 | 0.74 |
| PHSO:PHYSO_512445:PHYSO_510782:scaffold_6:1452554:1465516 | 3869 | 4069 | 70 | 77 | 1.5 |
| APAS:H257_02068:H257_02069:scaffold_3:1388710:1399525 | 4587 | 4700 | 38 | 73 | 5.3 |
| PHSO:PHYSO_284509:PHYSO_294786:scaffold_1:10580386:10585166 | 2668 | 2787 | 40 | 72 | 6.6 |
TBLASTN 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: OGOB.intergenic.fasta
274,424 sequences; 626,110,404 total letters
Query= PPTG_16673
Length=258
Score E
Sequences producing significant alignments: (Bits) Value
PHCA:PHYCA_504703:PHYCA_504706:scaffold_9:509317:514737 217 3e-63
PHSO:PHYSO_486521:PHYSO_296552:scaffold_2:5418027:5419042 79.7 5e-16
PYAP:PYAP_20399:PYAP_20400:scaffold_351:4434:9231 50.1 1e-05
PHCA:PHYCA_544885:PHYCA_564860:scaffold_16:404592:405441 34.7 0.74
PHSO:PHYSO_512445:PHYSO_510782:scaffold_6:1452554:1465516 34.3 1.5
APAS:H257_02068:H257_02069:scaffold_3:1388710:1399525 32.7 5.3
PHSO:PHYSO_284509:PHYSO_294786:scaffold_1:10580386:10585166 32.3 6.6
>PHCA:PHYCA_504703:PHYCA_504706:scaffold_9:509317:514737
Length=5420
Score = 217 bits (553), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 136/232 (59%), Positives = 163/232 (70%), Gaps = 26/232 (11%)
Frame = +2
Query 38 VQEVSTVKGVVHIPYMEATSVEFDIRSNRSISSSFYVKGSAACPDHRGL------MNSLR 91
VQ +STV GV+ +P ME TSVEFD+RSNRS+SSSFY C D G M S+R
Sbjct 2474 VQAISTVNGVIQVPGMEDTSVEFDMRSNRSLSSSFYF----TCTDRLGRDFADISMGSVR 2641
Query 92 SFRAQGPVEVAKKEQKKLRKALERAVKQERKEARKMQKLAKKSDRSVRERGGSCN-RIAL 150
S EV KK+QKK+RKAL+R +KQERKEARK+QK A+KSDRS R RG S + +I+L
Sbjct 2642 SLHD----EVTKKDQKKIRKALDRTIKQERKEARKLQKWARKSDRSSRTRGSSTSSQISL 2809
Query 151 LSTTTVSDCSVMSDQEILAEIWAMRSSSMGRVSDESMPVVDDKLAD-TAPMEFLFFTGCP 209
LS T VSDC+ SDQEILAEIWA R SS+G + +P +D +L D T P EFLFFTGCP
Sbjct 2810 LSVT-VSDCNGTSDQEILAEIWATRPSSLGH---DELPEIDAELVDETRPTEFLFFTGCP 2977
Query 210 DDNS---LDVRHRRARSKARLARYSATPSFTTTVPVKSTLVSNMPPLFVPRF 258
DD + LDV +RR RS Y ATPS+ TTVPVK TLV++MPPLF+PRF
Sbjct 2978 DDKNLRELDVGYRRLRSN---PGYRATPSYATTVPVKPTLVTDMPPLFMPRF 3124
>PHSO:PHYSO_486521:PHYSO_296552:scaffold_2:5418027:5419042
Length=1015
Score = 79.7 bits (195), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/95 (58%), Positives = 65/95 (68%), Gaps = 6/95 (6%)
Frame = +2
Query 38 VQEVSTVKGVVHIPYMEATSVEFDIRSNRSISSSFYVKGSAACPDHRGL------MNSLR 91
VQ GVV +P E + VEF++RSNRS+SSSF+ S A D G M+S R
Sbjct 731 VQAAPVADGVVRVPSTETSPVEFEMRSNRSMSSSFHFTSSGARTDRLGRDPAEMSMSSAR 910
Query 92 SFRAQGPVEVAKKEQKKLRKALERAVKQERKEARK 126
SFRA PVE+AK EQKKLRKALERAV+QERKEA+K
Sbjct 911 SFRAVDPVELAKAEQKKLRKALERAVRQERKEAQK 1015
>PYAP:PYAP_20399:PYAP_20400:scaffold_351:4434:9231
Length=4797
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/150 (31%), Positives = 67/150 (45%), Gaps = 14/150 (9%)
Frame = -2
Query 117 VKQERKEARKMQKLAKKSDR-----SVRERGGSCNRIALLSTTTVSDCSVMSDQEILAEI 171
V RKE++++QK+ KK+ + E+ R S TT S M + L +
Sbjct 3554 VPLSRKESKRLQKMMKKASKKQVMTEADEKEPGWLR-QYWSATTKRPLSEMQCNDYLQDF 3378
Query 172 WAMRSSSMGRVSDESMPVVDDKLADTAP--MEFLFFTGCPDDNSLDVRHRRA---RSKAR 226
M + + S + D+ P MEFLFF G D++ R A R +A
Sbjct 3377 GGMLADPTPYSTTGSRTSASN---DSPPPRMEFLFFGGSSDESVHSKREIGADLRRHRAH 3207
Query 227 LARYSATPSFTTTVPVKSTLVSNMPPLFVP 256
PS T ++PVK TLV N+PP+F P
Sbjct 3206 FMAQRPVPSCTRSIPVKPTLVRNLPPVFEP 3117
>PHCA:PHYCA_544885:PHYCA_564860:scaffold_16:404592:405441
Length=849
Score = 34.7 bits (78), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (59%), Gaps = 7/78 (9%)
Frame = -1
Query 85 GLMNSLRSFRAQGPVEVAKKEQKKLRKALERAVKQERKEARKMQKLAK-----KSDRSVR 139
+M+ LRS + ++++ K+ A+ERAVKQER+EARK+Q + K R
Sbjct 447 NIMSRLRSSPLTSKLHISRRP-KRTH*AMERAVKQERQEARKLQNWHESWQVLKGARKQH 271
Query 140 ERGGSCNRIALLSTTTVS 157
++ + NR+AL T++++
Sbjct 270 QQ-PNINRLALSLTSSIA 220
>PHSO:PHYSO_512445:PHYSO_510782:scaffold_6:1452554:1465516
Length=12962
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (46%), Gaps = 3/70 (4%)
Frame = +2
Query 89 SLRSFRAQGPVEVAKKEQKKLRKALERAVKQERKEARKMQKLAKKSDRSVRERGGSCNRI 148
S S+ G + + L A E A R + LA+++ RSV ERGG C R+
Sbjct 3869 STWSWNPDGTSTASSPNTRILPTAKELAFTTSRPRLSRSAWLARRTTRSVEERGGPCMRL 4048
Query 149 ALLSTTTVSD 158
A T VSD
Sbjct 4049 A---TRAVSD 4069
>APAS:H257_02068:H257_02069:scaffold_3:1388710:1399525
Length=10815
Score = 32.7 bits (73), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (61%), Gaps = 7/38 (18%)
Frame = +3
Query 66 RSISSSFYVKGSAAC--PDHRGLMNSLRS-----FRAQ 96
R +SS VK SA+C PDHR +MN+L S FR Q
Sbjct 4587 RCLSSQIKVKMSASCH*PDHRSIMNTLNSQVANTFRIQ 4700
>PHSO:PHYSO_284509:PHYSO_294786:scaffold_1:10580386:10585166
Length=4780
Score = 32.3 bits (72), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/40 (38%), Positives = 20/40 (50%), Gaps = 0/40 (0%)
Frame = -2
Query 182 VSDESMPVVDDKLADTAPMEFLFFTGCPDDNSLDVRHRRA 221
V ++ +DDK A A + CP NSL +RH RA
Sbjct 2787 VRHSALYTLDDKGATAAASRCYWPASCPSSNSLRMRHARA 2668
Lambda K H a alpha
0.318 0.128 0.359 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 24900016260
Database: OGOB.intergenic.fasta
Posted date: Sep 16, 2018 4:46 PM
Number of letters in database: 626,110,404
Number of sequences in database: 274,424
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40