BLAST results for PPTG_16672 - Oomycete Gene Order Browser

Full BLAST raw output including alignments follows below the summary table

Hit Name	Hit Start	Hit End	HSP Length	HSP Score	HSP Significance
PYAP:PYAP_20399:PYAP_20400:scaffold_351:4434:9231	1263	1415	51	76	2.1
PYIW:PYIW_19157:PYIW_19158:scaffold_784:3430:5520	1332	1502	57	71	9.3

TBLASTN 2.12.0+

Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.

Database: OGOB.intergenic.fasta
           274,424 sequences; 626,110,404 total letters

Query= PPTG_16672

Length=286
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

PYAP:PYAP_20399:PYAP_20400:scaffold_351:4434:9231                     33.9    2.1  
PYIW:PYIW_19157:PYIW_19158:scaffold_784:3430:5520                     32.0    9.3

>PYAP:PYAP_20399:PYAP_20400:scaffold_351:4434:9231
Length=4797

 Score = 33.9 bits (76),  Expect = 2.1, Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 31/51 (61%), Gaps = 6/51 (12%)
 Frame = -2

Query  223   FLFFGGSDVDST----FQPELRPSELDDLHENDIRPSL--QAKMPLFFSPP  267
             ++ F G++         +P+ +P   DD+H +++RPSL    ++P+FF+PP
Sbjct  1415  YVLFLGTERSGYKPDHLRPKYQPQNHDDVHLDELRPSLLEGRQLPVFFTPP  1263

>PYIW:PYIW_19157:PYIW_19158:scaffold_784:3430:5520
Length=2090

 Score = 32.0 bits (71),  Expect = 9.3, Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 10/57 (18%)
 Frame = +3

Query  219   QRVSFLFFGGSDVDSTFQPELRPSELDDL----------HENDIRPSLQAKMPLFFS  265
             +R  FLFF GS+      P +  + ++            HE  ++P +  +MP+FFS
Sbjct  1332  ERPQFLFFCGSESTGMRTPSVSSARMNAAFQQQAAQQQAHETVVKPVISHRMPVFFS  1502

Lambda      K        H        a         alpha
   0.311    0.128    0.367    0.792     4.96

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6

Effective search space used: 29622001248

  Database: OGOB.intergenic.fasta
    Posted date:  Sep 16, 2018  4:46 PM
  Number of letters in database: 626,110,404
  Number of sequences in database:  274,424

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40