TBLASTN 2.12.0+

Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.

Database: OGOB.intergenic.fasta
           274,424 sequences; 626,110,404 total letters

Query= PHYSO_348903

Length=766
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

PHCA:PHYCA_507519:PHYCA_507521:scaffold_28:279076:281206              50.4    7e-05
PHKE:PHYKE_8991:PHYKE_8992:scaffold_386:5416:9948                     50.1    1e-04

>PHCA:PHYCA_507519:PHYCA_507521:scaffold_28:279076:281206
Length=2130

 Score = 50.4 bits (119),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 72/328 (22%), Positives = 128/328 (39%), Gaps = 74/328 (23%)
 Frame = -1

Query  354   LLAVVGEGGTGKSAFCGTVAQQFRGNMLAAHCCQFDRKSKSTPRNVLLSMVHQIVDNYPP  413
             +  VVG+ G+GKS+    +       + A H  + + +   + R  +LS+ +Q+    P 
Sbjct  1149  MFWVVGQIGSGKSSVAACMVHSC-PEIAAFHFARQEDEQTHSARRCILSLAYQLTTQLPE  973

Query  414   FKNQL-ARLNLKYVLEEADPMLLAAKVLVDPLNALEEPVQ--AAFMMVDGID--------  462
             + + L +   L+ ++  A  + L   +L+ PLNA+  P +  +  +++DG++        
Sbjct  972   YAHYLQSHEPLEEMVPVASFVELVTHLLIGPLNAIARPTKYKSLVLLIDGVEWLIPRPAS  793

Query  463   --------QCAAGAQGRNELLEFFAQIIPQLPTWVGFllss-----kpssklakrlPVSS  509
                         G+     L+     +I +LP WV  +L S       S   A   P  +
Sbjct  792   SSLPPLSGNSWKGSNDEECLVSMLPSLISRLPEWVRVVLLSREDPPVLSKLHAFVPPDIT  613

Query  510   VLDFSAENDAFVADVAPLVEDIAR---------NFSDDDFVKAK----------------  544
             +  F  +ND          +DI R         +FSDDDF KA                 
Sbjct  612   IEQFQQQND----------QDIRRYVHHSLSKLHFSDDDFEKASVGIEPSSHRCGMDQAV  463

Query  545   SMLKQKSGGNFAYLEFTKQALSHPGMAAASKEGAVPLGVLNDLPETLYDIYAEIFEDKFG  604
              ++ ++S G F Y     QA+S         EG + L  L +LP  +     + F   F 
Sbjct  462   ELIARRSEGLFLYAVNVVQAIS---------EGRLHLNELAELPVGMGAYLQQFFASHFS  310

Query  605   QGRARVWGKAKPLLQLVVGAASGPYSPV  632
                     + +P+L++   A    Y P+
Sbjct  309   DHDMYK-HRVRPVLEVCCAA----YEPL  241

>PHKE:PHYKE_8991:PHYKE_8992:scaffold_386:5416:9948
Length=4532

 Score = 50.1 bits (118),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 27/165 (16%)
 Frame = +3

Query  350   GSDILLAVVGEGGTGKSAFCGTVAQQFRGNMLAAHCCQFDRKSKSTPRNVLLSMVHQIVD  409
             GS  +  VVG+ G GK++    + Q     + A H  Q + +     R  +LS+ +Q+  
Sbjct  2592  GSQRVFWVVGQIGAGKTSVAARLVQSC-PEIAAFHFAQQEDEQTHNARRCVLSLAYQLTT  2768

Query  410   NYPPFKNQLARLNLKYVLEEADPML----LAAKVLVDPLNALEEPVQAAFMMVDGIDQCA  465
               P + + L        LEE  P+     L   +LV PLNA+  P ++  +++DG++   
Sbjct  2769  QLPEYAHYLQS---HEPLEEMVPVASFPELVTNLLVGPLNAIARPSKSLVLLIDGLEWLI  2939

Query  466   AGA-----------------QGRNE--LLEFFAQIIPQLPTWVGF  491
               +                 + + E  L+     ++P+LP WV F
Sbjct  2940  PASSSSSPPSLSSLSMSSWKESKEEECLVSMLPSLVPRLPEWVRF  3074

Lambda      K        H        a         alpha
   0.317    0.130    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110742251048

  Database: OGOB.intergenic.fasta
    Posted date:  Sep 16, 2018  4:46 PM
  Number of letters in database: 626,110,404
  Number of sequences in database:  274,424

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40