Full BLAST raw output including alignments follows below the summary table
| Hit Name |
Hit Start |
Hit End |
HSP Length |
HSP Score |
HSP Significance |
| PHCA:PHYCA_541448:PHYCA_84671:scaffold_6:1395888:1405546 | 7798 | 8292 | 166 | 221 | 7e-20 |
| PHCA:PHYCA_14852:PHYCA_41602:scaffold_9:1050936:1085229 | 27230 | 27562 | 111 | 218 | 2e-19 |
| PHCA:PHYCA_106668:PHYCA_73150:scaffold_12:155821:186786 | 23628 | 24002 | 125 | 210 | 2e-18 |
| PHCA:PHYCA_38713:PHYCA_131597:scaffold_108:57382:61064 | 49 | 543 | 165 | 192 | 5e-16 |
| PHCA:PHYCA_112447:PHYCA_62606:scaffold_22:415781:423287 | 1791 | 2090 | 100 | 177 | 6e-14 |
| PHCA:PHYCA_112884:PHYCA_113253:scaffold_23:576728:580738 | 3462 | 3770 | 103 | 172 | 2e-13 |
| PHCA:PHYCA_545635:PHYCA_70633:scaffold_18:776417:785492 | 4782 | 5087 | 102 | 157 | 2e-11 |
| PHCA:PHYCA_69480:PHYCA_42997:scaffold_25:253839:261652 | 3818 | 4195 | 136 | 153 | 7e-11 |
| PHCA:PHYCA_509124:PHYCA_60922:scaffold_42:184427:195998 | 7125 | 7499 | 126 | 133 | 4e-08 |
| PHCA:PHYCA_107546:PHYCA_15441:scaffold_13:715744:726740 | 4110 | 4292 | 61 | 131 | 6e-08 |
| PHCA:PHYCA_116743:PHYCA_116558:scaffold_31:517973:526388 | 3636 | 3983 | 117 | 128 | 2e-07 |
| PHSO:PHYSO_448414:PHYSO_308115:scaffold_24:154763:158624 | 622 | 792 | 59 | 88 | 0.029 |
| PHSO:PHYSO_300921:PHYSO_434994:scaffold_4:4907820:4911681 | 3069 | 3239 | 59 | 88 | 0.029 |
| PHIF:PITG_02964:PITG_02967:NW_003303756.1:5101647:5138377 | 31121 | 31318 | 69 | 82 | 0.16 |
| PHSO:PHYSO_498031:PHYSO_500434:scaffold_4:1180046:1180877 | 372 | 416 | 15 | 74 | 1.3 |
| PYIR:PYIR_21726:PYIR_21725:scaffold_782:7332:12163 | 1717 | 1839 | 43 | 74 | 1.6 |
| PHIF:PITG_12201:PITG_12204:NW_003303735.1:1230130:1244100 | 10453 | 10503 | 17 | 71 | 3.5 |
| PHCA:PHYCA_84672:PHYCA_42588:scaffold_16:133192:140402 | 1410 | 1457 | 16 | 69 | 7.2 |
TBLASTN 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: OGOB.intergenic.fasta
274,424 sequences; 626,110,404 total letters
Query= PHYCA_14729
Length=179
Score E
Sequences producing significant alignments: (Bits) Value
PHCA:PHYCA_541448:PHYCA_84671:scaffold_6:1395888:1405546 89.7 7e-20
PHCA:PHYCA_14852:PHYCA_41602:scaffold_9:1050936:1085229 88.6 2e-19
PHCA:PHYCA_106668:PHYCA_73150:scaffold_12:155821:186786 85.5 2e-18
PHCA:PHYCA_38713:PHYCA_131597:scaffold_108:57382:61064 78.6 5e-16
PHCA:PHYCA_112447:PHYCA_62606:scaffold_22:415781:423287 72.8 6e-14
PHCA:PHYCA_112884:PHYCA_113253:scaffold_23:576728:580738 70.9 2e-13
PHCA:PHYCA_545635:PHYCA_70633:scaffold_18:776417:785492 65.1 2e-11
PHCA:PHYCA_69480:PHYCA_42997:scaffold_25:253839:261652 63.5 7e-11
PHCA:PHYCA_509124:PHYCA_60922:scaffold_42:184427:195998 55.8 4e-08
PHCA:PHYCA_107546:PHYCA_15441:scaffold_13:715744:726740 55.1 6e-08
PHCA:PHYCA_116743:PHYCA_116558:scaffold_31:517973:526388 53.9 2e-07
PHSO:PHYSO_448414:PHYSO_308115:scaffold_24:154763:158624 38.5 0.029
PHSO:PHYSO_300921:PHYSO_434994:scaffold_4:4907820:4911681 38.5 0.029
PHIF:PITG_02964:PITG_02967:NW_003303756.1:5101647:5138377 36.2 0.16
PHSO:PHYSO_498031:PHYSO_500434:scaffold_4:1180046:1180877 33.1 1.3
PYIR:PYIR_21726:PYIR_21725:scaffold_782:7332:12163 33.1 1.6
PHIF:PITG_12201:PITG_12204:NW_003303735.1:1230130:1244100 32.0 3.5
PHCA:PHYCA_84672:PHYCA_42588:scaffold_16:133192:140402 31.2 7.2
>PHCA:PHYCA_541448:PHYCA_84671:scaffold_6:1395888:1405546
Length=9658
Score = 89.7 bits (221), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 85/166 (51%), Positives = 108/166 (65%), Gaps = 3/166 (2%)
Frame = +1
Query 1 MKLDGPDEENLTTFDEATGTVIVGSAVVTDWTdelledakerdeeraaVYLATVHPAMAS 60
M++DG DEE LTT D AT TV+VGS V DW DE+ E K RD+ERAAVYLAT+ PAM S
Sbjct 7798 MEVDGSDEEKLTTVDLATRTVVVGSHEVVDWMDEMAEGVKLRDKERAAVYLATLRPAMTS 7977
Query 61 ARFSWeereeaqrrrsaeLKRRILELERSGEGANRLRTGEGATVTDEAKVLDEDSGTVTV 120
RFS +EREEAQRRRS L+R EL +GEGA+RL +GEGATV EDS T TV
Sbjct 7978 DRFS*DEREEAQRRRSERLERWNRELIEAGEGASRLESGEGATVASSMNECGEDSDTPTV 8157
Query 121 ENEVTSEYENG-TVEVLSG-TENDSKNDGRYGNSSVAAVDTSSGSD 164
++ T +EN T E +G + +D++ G + +VD + S+
Sbjct 8158 -SDATPAFENKVTCEQCTGNSASDAQAAGTVNVQLIRSVDAGACSN 8292
>PHCA:PHYCA_14852:PHYCA_41602:scaffold_9:1050936:1085229
Length=34293
Score = 88.6 bits (218), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/111 (57%), Positives = 84/111 (76%), Gaps = 0/111 (0%)
Frame = -3
Query 1 MKLDGPDEENLTTFDEATGTVIVGSAVVTDWTdelledakerdeeraaVYLATVHPAMAS 60
+K++ DEE LTT D AT TV+VGS + TDWT+ +L+ +ERD+++AAVY+ATV PAMA
Sbjct 27562 LKMEETDEEQLTTIDLATRTVVVGSTLATDWTNGILDYTEERDDKKAAVYMATVRPAMAP 27383
Query 61 ARFSWeereeaqrrrsaeLKRRILELERSGEGANRLRTGEGATVTDEAKVL 111
ARFS +REEAQ RRS LKR + EL ++GEGA+R +TGEGA + KV+
Sbjct 27382 ARFSRSDREEAQHRRSLRLKREMQELAQTGEGADRSKTGEGAVASKVLKVV 27230
>PHCA:PHYCA_106668:PHYCA_73150:scaffold_12:155821:186786
Length=30965
Score = 85.5 bits (210), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/125 (54%), Positives = 81/125 (65%), Gaps = 0/125 (0%)
Frame = +3
Query 1 MKLDGPDEENLTTFDEATGTVIVGSAVVTDWTdelledakerdeeraaVYLATVHPAMAS 60
MK+DG D+E LTT D AT TV+VGS VV DW E+ D + RD +RAA YLATV PAMA+
Sbjct 23628 MKMDGSDDEGLTTVDFATRTVVVGSTVVDDWMSEMQSDVETRDPKRAATYLATVRPAMAT 23807
Query 61 ARFSWeereeaqrrrsaeLKRRILELERSGEGANRLRTGEGATVTDEAKVLDEDSGTVTV 120
ARFS +REE QRRRSA L RR E +GEGA+R TGEG T + +ED T
Sbjct 23808 ARFSRSKREEEQRRRSATLGRRAQERAPTGEGADRSSTGEGDTEPERTSRSNEDDSAPTT 23987
Query 121 ENEVT 125
+ T
Sbjct 23988 SDAAT 24002
>PHCA:PHYCA_38713:PHYCA_131597:scaffold_108:57382:61064
Length=3682
Score = 78.6 bits (192), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 83/165 (50%), Positives = 105/165 (64%), Gaps = 1/165 (1%)
Frame = -2
Query 1 MKLDGPDEENLTTFDEATGTVIVGSAVVTDWTdelledakerdeeraaVYLATVHPAMAS 60
MK+DG DEE LTT D AT TV+VGS V DW DE+ E K RD+ERAAVYLAT+ PAM S
Sbjct 543 MKVDGSDEEKLTTVDLATRTVVVGSHEVVDWMDEMAEGVKLRDKERAAVYLATLRPAMTS 364
Query 61 ARFSWeereeaqrrrsaeLKRRILELERSGEGANRLRTGEGATVTDEAKVLDEDSGTVTV 120
RFS +EREEAQRRRS L+RR EL +GEGA+RL + EGATVT EDS T V
Sbjct 363 DRFSRDEREEAQRRRSERLERRNRELREAGEGASRLESREGATVTSSMNEYGEDSDTPNV 184
Query 121 ENEVTSEYENGTVEVLSG-TENDSKNDGRYGNSSVAAVDTSSGSD 164
+ ++ T E +G + +D++ G + +VD + S+
Sbjct 183 SDAAPVLEDSVTCEQCTGNSASDAQAAGTVNVQLIRSVDAGACSN 49
>PHCA:PHYCA_112447:PHYCA_62606:scaffold_22:415781:423287
Length=7506
Score = 72.8 bits (177), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/100 (64%), Positives = 78/100 (78%), Gaps = 0/100 (0%)
Frame = -2
Query 1 MKLDGPDEENLTTFDEATGTVIVGSAVVTDWTdelledakerdeeraaVYLATVHPAMAS 60
MK++ DEE LTT D ATGT IVG+ VT+W +E++ DA+E D E AAV LATVHPAM S
Sbjct 2090 MKVEDSDEERLTTVDLATGTAIVGNVRVTNWMEEMMADAEEYDAELAAVRLATVHPAMTS 1911
Query 61 ARFSWeereeaqrrrsaeLKRRILELERSGEGANRLRTGE 100
RFS EEREEAQR+R A+L++R+ EL RSGEGA +L TGE
Sbjct 1910 RRFSREEREEAQRQRPAKLEQRVRELARSGEGAQQLATGE 1791
>PHCA:PHYCA_112884:PHYCA_113253:scaffold_23:576728:580738
Length=4010
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/103 (59%), Positives = 81/103 (79%), Gaps = 0/103 (0%)
Frame = +3
Query 1 MKLDGPDEENLTTFDEATGTVIVGSAVVTDWTdelledakerdeeraaVYLATVHPAMAS 60
+K++ D+E LTT D T TVIVG+ +VTDWTD +L+DA+ERD +RA+VYLATV PAMAS
Sbjct 3462 LKMEETDDEKLTTVDLTTRTVIVGNTLVTDWTDGILDDAEERDVDRASVYLATVRPAMAS 3641
Query 61 ARFSWeereeaqrrrsaeLKRRILELERSGEGANRLRTGEGAT 103
ARFS +REEAQRRRS L+R + +L + GEGA+R +TG+ +
Sbjct 3642 ARFSRRDREEAQRRRSRRLEREVQKLVQPGEGADRSKTGKAPS 3770
>PHCA:PHYCA_545635:PHYCA_70633:scaffold_18:776417:785492
Length=9075
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/102 (59%), Positives = 75/102 (74%), Gaps = 3/102 (3%)
Frame = +3
Query 1 MKLDGPDEENLTTFDEATGTVIVGSAVVTDWTdelledakerdeeraaVYLATVHPAM-- 58
MK++ DEE LT D ATGTVIVG+ VT+W +E++ DA+E D E AAV LATVHPAM
Sbjct 4782 MKVEDSDEERLTRVDLATGTVIVGNVRVTNWMEEMMADAEEYDAELAAVRLATVHPAMTS 4961
Query 59 -ASARFSWeereeaqrrrsaeLKRRILELERSGEGANRLRTG 99
+R EEREEAQR+R A+L++R+ EL RSGEGA +L TG
Sbjct 4962 RRFSREEREEREEAQRQRPAKLEQRVRELARSGEGAQQLATG 5087
>PHCA:PHYCA_69480:PHYCA_42997:scaffold_25:253839:261652
Length=7813
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/136 (50%), Positives = 80/136 (59%), Gaps = 11/136 (8%)
Frame = +2
Query 1 MKLDGPDEENLTTFDEATGTVIVGSAVVTDWTdelledakerdeeraaVYLATVHPAMAS 60
MK+DGP+EE LTT D A V+VG V W DE+ EDA++RD+ RAAVYLATV PAMA
Sbjct 3818 MKVDGPNEEELTTVDIAMRAVVVGRTEVRVWMDEMQEDAEQRDDARAAVYLATVRPAMAP 3997
Query 61 ARFSWeereeaqrrrsaeLKRRILELERSGEGANRLRTGEGATVT-DEAKVLDEDSGTVT 119
ARFS ERE A+ RR A L R E + GEG TVT EA V ED GT+
Sbjct 3998 ARFS*AEREYARYRRLASLGRETQEPSQHGEG----------TVTVCEAAVDTEDGGTLN 4147
Query 120 VENEVTSEYENGTVEV 135
+E E VE+
Sbjct 4148 AGDEGRLAVEGTDVEI 4195
>PHCA:PHYCA_509124:PHYCA_60922:scaffold_42:184427:195998
Length=11571
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 78/126 (62%), Gaps = 10/126 (8%)
Frame = +3
Query 1 MKLDGPDEENLTTFDEATGTVIVGSAVVTDWTdelledakerdeeraaVYLATVHPAMAS 60
MK+DG D+E LTT D AT + DW DE+ ED + RDEERAAV LATV PA+A+
Sbjct 7125 MKVDGYDDEGLTTVDLAT-RTVTVGTTRVDWMDEMWEDMEARDEERAAVCLATVRPAVAT 7301
Query 61 ARFSWeereeaqrrrsaeLKRRILELERSGEGANRLRTGEGA--TVTDEAKVL------- 111
RFS REE QRRR A L R+I E ++GEGA R GEGA V E+ V+
Sbjct 7302 TRFSRSAREEEQRRRFARLGRQIREPVQAGEGAERSAAGEGAERPVVGESDVVVDGTAEN 7481
Query 112 DEDSGT 117
DEDSGT
Sbjct 7482 DEDSGT 7499
>PHCA:PHYCA_107546:PHYCA_15441:scaffold_13:715744:726740
Length=10996
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 47/61 (77%), Gaps = 0/61 (0%)
Frame = -3
Query 4 DGPDEENLTTFDEATGTVIVGSAVVTDWTdelledakerdeeraaVYLATVHPAMASARF 63
D +EE LTT D AT TV+VG V DW DE+ EDA+ERD+ RAAVYLATV PAMASA+F
Sbjct 4292 DNLNEEALTTVDFATRTVVVGRTAVRDWMDEMREDAEERDDARAAVYLATVRPAMASAKF 4113
Query 64 S 64
S
Sbjct 4112 S 4110
>PHCA:PHYCA_116743:PHYCA_116558:scaffold_31:517973:526388
Length=8415
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/117 (56%), Positives = 74/117 (63%), Gaps = 1/117 (1%)
Frame = -2
Query 1 MKLDGPDEENLTTFDEATGTVIVGSAVVTDWTdelledakerdeeraaVYLATVHPAMAS 60
M +DG D+E LTT D AT TV V DW DE+ ED + RDEERAAV LATV PA+A+
Sbjct 3983 MTVDGSDDEGLTTVDLATRTVTV-GTTRVDWMDEMWEDMEARDEERAAVCLATVRPAVAT 3807
Query 61 ARFSWeereeaqrrrsaeLKRRILELERSGEGANRLRTGEGATVTDEAKVLDEDSGT 117
RFS REE QRRRSA L R+I E ++GEGA R GE D DEDSGT
Sbjct 3806 TRFSRSAREEEQRRRSARLGRQIREPVQAGEGAERPVVGESDVAVDGTTDNDEDSGT 3636
>PHSO:PHYSO_448414:PHYSO_308115:scaffold_24:154763:158624
Length=3861
Score = 38.5 bits (88), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/59 (46%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Frame = +1
Query 51 LATVHPAMASARFSWeereeaqrrrsaeLKRRILELERSGEGANRLRTGEGATVTDEAK 109
+ATV PAMA+AR+ + + QR A RR + ++GEGA+ L+ GEGAT++ EAK
Sbjct 622 VATVRPAMAAARYVRADHQPEQRDEGAV--RRAGDGRQAGEGADPLQAGEGATMSMEAK 792
>PHSO:PHYSO_300921:PHYSO_434994:scaffold_4:4907820:4911681
Length=3861
Score = 38.5 bits (88), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/59 (46%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Frame = -2
Query 51 LATVHPAMASARFSWeereeaqrrrsaeLKRRILELERSGEGANRLRTGEGATVTDEAK 109
+ATV PAMA+AR+ + + QR A RR + ++GEGA+ L+ GEGAT++ EAK
Sbjct 3239 VATVRPAMAAARYVRADHQPEQRDEGAV--RRAGDGRQAGEGADPLQAGEGATMSMEAK 3069
>PHIF:PITG_02964:PITG_02967:NW_003303756.1:5101647:5138377
Length=36730
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 37/69 (54%), Gaps = 3/69 (4%)
Frame = -1
Query 51 LATVHPAMASARFSWeereeaqrrrsaeLKRRILELERSGEGANRLRTGEGATVTDEAKV 110
++TV PAMA ARF + E +RR EL SG+G R +TGEGA V EA
Sbjct 31318 VSTVRPAMAVARFVRVPAKAMGTSDKKEGRRRGDEL--SGDGDGRRQTGEGA-VAKEASG 31148
Query 111 LDEDSGTVT 119
DE G ++
Sbjct 31147 YDETKGEMS 31121
>PHSO:PHYSO_498031:PHYSO_500434:scaffold_4:1180046:1180877
Length=831
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 15/15 (100%), Gaps = 0/15 (0%)
Frame = +3
Query 49 VYLATVHPAMASARF 63
+Y+ATVHPAMA+AR+
Sbjct 372 IYVATVHPAMAAARY 416
>PYIR:PYIR_21726:PYIR_21725:scaffold_782:7332:12163
Length=4831
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/43 (42%), Positives = 23/43 (53%), Gaps = 2/43 (5%)
Frame = +1
Query 133 VEVLSGTENDSKNDGRYGNSSVAAVDTSSGSDELVKHPNRKGK 175
+EV+ E D D G+ +AAV S DELV P R+GK
Sbjct 1717 IEVIDSNEEDHLPDALIGSLRIAAV--SLFCDELVPRPKRRGK 1839
>PHIF:PITG_12201:PITG_12204:NW_003303735.1:1230130:1244100
Length=13970
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/17 (59%), Positives = 15/17 (88%), Gaps = 0/17 (0%)
Frame = -3
Query 49 VYLATVHPAMASARFSW 65
+Y++TV PAMASAR+ +
Sbjct 10503 IYVSTVRPAMASARYKY 10453
>PHCA:PHYCA_84672:PHYCA_42588:scaffold_16:133192:140402
Length=7210
Score = 31.2 bits (69), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/16 (63%), Positives = 13/16 (81%), Gaps = 0/16 (0%)
Frame = -3
Query 50 YLATVHPAMASARFSW 65
Y+ATV PAMA+ R+ W
Sbjct 1457 YVATVRPAMAAQRYKW 1410
Lambda K H a alpha
0.305 0.125 0.344 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 11923854660
Database: OGOB.intergenic.fasta
Posted date: Sep 16, 2018 4:46 PM
Number of letters in database: 626,110,404
Number of sequences in database: 274,424
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40