Full BLAST raw output including alignments follows below the summary table
| Hit Name |
Hit Start |
Hit End |
HSP Length |
HSP Score |
HSP Significance |
| PYUU:PYU1_G013930:PYU1_G013929:scaffold_1478:95799:99113 | 1 | 234 | 78 | 288 | 2e-29 |
| PHSO:PHYSO_525429:PHYSO_249932:scaffold_10:2276779:2278143 | 1091 | 1363 | 91 | 129 | 3e-08 |
| PYUU:PYU1_G005718:PYU1_G005717:scaffold_1402:582852:583973 | 682 | 813 | 44 | 124 | 2e-07 |
| APIN:H310_10060:H310_10061:scaffold_24:523892:532817 | 442 | 606 | 55 | 118 | 1e-06 |
| PHKE:PHYKE_5982:PHYKE_5983:scaffold_226:51255:53312 | 1279 | 1527 | 83 | 100 | 3e-04 |
| PHRA:PHYRA_82854:PHYRA_82855:scaffold_78:174134:205810 | 160 | 471 | 112 | 95 | 0.001 |
| PHRA:PHYRA_85211:PHYRA_85212:scaffold_152:22076:31507 | 9092 | 9298 | 77 | 94 | 0.002 |
| PHRA:PHYRA_46662:PHYRA_85746:scaffold_298:9784:16588 | 147 | 353 | 77 | 92 | 0.003 |
| PHCA:PHYCA_560411:PHYCA_100057:scaffold_4:1524818:1539500 | 13487 | 13693 | 69 | 90 | 0.007 |
| PYAP:PYAP_20232:PYAP_20231:scaffold_335:22372:28546 | 1437 | 1700 | 91 | 79 | 0.16 |
| PLHA:PHALS_03211:PHALS_03212:NW_020189011.1:89099:91002 | 1252 | 1362 | 37 | 69 | 3.5 |
| HYAP:HYAP_00447:HYAP_00448:scaffold_2:943531:960666 | 8174 | 8383 | 72 | 69 | 4.2 |
| APAS:H257_15245:H257_15246:scaffold_68:126390:127190 | 226 | 291 | 22 | 66 | 7.0 |
TBLASTN 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: OGOB.intergenic.fasta
274,424 sequences; 626,110,404 total letters
Query= HYAP_01510
Length=138
Score E
Sequences producing significant alignments: (Bits) Value
PYUU:PYU1_G013930:PYU1_G013929:scaffold_1478:95799:99113 115 2e-29
PHSO:PHYSO_525429:PHYSO_249932:scaffold_10:2276779:2278143 54.3 3e-08
PYUU:PYU1_G005718:PYU1_G005717:scaffold_1402:582852:583973 52.4 2e-07
APIN:H310_10060:H310_10061:scaffold_24:523892:532817 50.1 1e-06
PHKE:PHYKE_5982:PHYKE_5983:scaffold_226:51255:53312 43.1 3e-04
PHRA:PHYRA_82854:PHYRA_82855:scaffold_78:174134:205810 41.2 0.001
PHRA:PHYRA_85211:PHYRA_85212:scaffold_152:22076:31507 40.8 0.002
PHRA:PHYRA_46662:PHYRA_85746:scaffold_298:9784:16588 40.0 0.003
PHCA:PHYCA_560411:PHYCA_100057:scaffold_4:1524818:1539500 39.3 0.007
PYAP:PYAP_20232:PYAP_20231:scaffold_335:22372:28546 35.0 0.16
PLHA:PHALS_03211:PHALS_03212:NW_020189011.1:89099:91002 31.2 3.5
HYAP:HYAP_00447:HYAP_00448:scaffold_2:943531:960666 31.2 4.2
APAS:H257_15245:H257_15246:scaffold_68:126390:127190 30.0 7.0
>PYUU:PYU1_G013930:PYU1_G013929:scaffold_1478:95799:99113
Length=3314
Score = 115 bits (288), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 54/78 (69%), Positives = 63/78 (81%), Gaps = 0/78 (0%)
Frame = -3
Query 37 KKEASLVLQANVKHWPLKLTSVASNRLQITVQFKRESNTFQPGEISSMVLIKMREIAEAY 96
+K V+QA+ KHWP K+ + A ++ QI VQFK ES TFQP EISSMVL KM+EIAEAY
Sbjct 234 RKFTDPVVQADTKHWPFKVVAGAESKPQIVVQFKGESKTFQPEEISSMVLTKMKEIAEAY 55
Query 97 IGKQVKNAVMTVPAYFND 114
IGKQVKNAV+TVPAYFND
Sbjct 54 IGKQVKNAVITVPAYFND 1
>PHSO:PHYSO_525429:PHYSO_249932:scaffold_10:2276779:2278143
Length=1364
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/91 (30%), Positives = 51/91 (56%), Gaps = 0/91 (0%)
Frame = +2
Query 16 KRSSKGRSIASIGNTLINVLIKKEASLVLQANVKHWPLKLTSVASNRLQITVQFKRESNT 75
+R+ A G ++ +K + +Q +K WP K+ ++ + V F+ ES +
Sbjct 1091 RRAGHAPVAAECGKHGGRLVGRKFSDPEIQEGIKLWPFKVVCGPDDKPVLVVTFEGESRS 1270
Query 76 FQPGEISSMVLIKMREIAEAYIGKQVKNAVM 106
FQP EI +M L ++RE+AE+ G+++ +AV+
Sbjct 1271 FQPVEILAMFLSELREMAESSTGEKLTDAVV 1363
>PYUU:PYU1_G005718:PYU1_G005717:scaffold_1402:582852:583973
Length=1121
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 0/44 (0%)
Frame = +1
Query 76 FQPGEISSMVLIKMREIAEAYIGKQVKNAVMTVPAYFNDLQRTL 119
FQP +I+ M+L+KMR + EA+ GK+VK AV+ PA F QR +
Sbjct 682 FQPEQITPMILMKMRAMVEAFAGKEVKYAVIAAPALFTSAQRQI 813
>APIN:H310_10060:H310_10061:scaffold_24:523892:532817
Length=8925
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 0/55 (0%)
Frame = +1
Query 40 ASLVLQANVKHWPLKLTSVASNRLQITVQFKRESNTFQPGEISSMVLIKMREIAE 94
+ +++ + H+P K+T+ ++ I V FK E+ +F P EISSMVL +M+E AE
Sbjct 442 SDPIVKKDAAHFPFKITAGDDDKPLIEVTFKGEAKSFTPEEISSMVLTRMKETAE 606
>PHKE:PHYKE_5982:PHYKE_5983:scaffold_226:51255:53312
Length=2057
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/83 (35%), Positives = 51/83 (61%), Gaps = 0/83 (0%)
Frame = -3
Query 37 KKEASLVLQANVKHWPLKLTSVASNRLQITVQFKRESNTFQPGEISSMVLIKMREIAEAY 96
+K ++ +LQ ++ P K+ + R ++ +QF+ ++ TF +I + +L KM + AE
Sbjct 1527 RKFSNPILQ*DMTL*PFKVVCDSKQRAKVQMQFRGKTKTFLSKQILATMLTKMCQTAEKG 1348
Query 97 IGKQVKNAVMTVPAYFNDLQRTL 119
IG +V+N V+TVPA FN QR +
Sbjct 1347 IGTEVENVVVTVPAAFNTTQRQI 1279
>PHRA:PHYRA_82854:PHYRA_82855:scaffold_78:174134:205810
Length=31676
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 60/112 (54%), Gaps = 18/112 (16%)
Frame = +1
Query 35 LIKKEASLV-----LQANVKHWPLKLTSVASNRLQITVQFKRESNTFQP--GEISSMVLI 87
LI K+ +L+ +QA+++H P KLTS + QITVQ K + P G I+
Sbjct 160 LIGKQHALISARPMMQADIRHRPFKLTSGPGGKPQITVQCK-GGDQVVPYRGNIA----- 321
Query 88 KMREIAEAYIGKQVKNAVM--TVPAYFNDL-QRTLSSLAQAYIEGNSKYTNI 136
+ +A+IGK+VK ++ + YF+ L + TL +L Y++ + +++
Sbjct 322 --HRVDQAFIGKEVKYFLVG*GILCYFSYL*E*TLITLPVLYLQLDCCVSDL 471
>PHRA:PHYRA_85211:PHYRA_85212:scaffold_152:22076:31507
Length=9431
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (55%), Gaps = 15/77 (19%)
Frame = -2
Query 33 NVLIKKEASLV-----LQANVKHWPLKLTSVASNRLQITVQFKRESNTFQP--GEISSMV 85
+ LI K+ +L+ +QA+++H P KLTS + QITVQ K + P G I+
Sbjct 9298 DGLIGKQHALISARPMMQADIRHRPFKLTSGPGGKPQITVQCK-GGDQVVPYRGNIA--- 9131
Query 86 LIKMREIAEAYIGKQVK 102
+ +A+IGK+VK
Sbjct 9130 ----HRVDQAFIGKEVK 9092
>PHRA:PHYRA_46662:PHYRA_85746:scaffold_298:9784:16588
Length=6804
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (55%), Gaps = 15/77 (19%)
Frame = +3
Query 33 NVLIKKEASLV-----LQANVKHWPLKLTSVASNRLQITVQFKRESNTFQP--GEISSMV 85
+ LI K+ +L+ +QA+++H P KLTS + QITVQ K + P G I+ V
Sbjct 147 DGLIGKQHALISARPMMQADIRHRPFKLTSGPGGKPQITVQCK-GGDQVVPYRGNIAHCV 323
Query 86 LIKMREIAEAYIGKQVK 102
+A+IGK++K
Sbjct 324 -------DQAFIGKEMK 353
>PHCA:PHYCA_560411:PHYCA_100057:scaffold_4:1524818:1539500
Length=14682
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (57%), Gaps = 4/69 (6%)
Frame = +2
Query 53 LKLTSVA-SNRLQITVQFKRESNTFQPGEISSMVLI---KMREIAEAYIGKQVKNAVMTV 108
+++T++A R +FK + F +IS MVL+ +M++ A + + + AV V
Sbjct 13487 IEVTAIAEGGRCCSRYEFKARTKGFTSEKISFMVLLVVLRMKKTAGVSLDQNISQAVGEV 13666
Query 109 PAYFNDLQR 117
P+YFND QR
Sbjct 13667 PSYFNDQQR 13693
>PYAP:PYAP_20232:PYAP_20231:scaffold_335:22372:28546
Length=6174
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 7/91 (8%)
Frame = +3
Query 31 LINVLIKKEASLVLQANVKHWPLKLTSVASNR----LQITVQFKRESNTFQPGEISSMVL 86
LI +L +K + + A W +L + + Q T R + F P E+ ++++
Sbjct 1437 LIELLGRKMSDFTV-AQTNSWAFRLVQGQAGKAFVEFQTTTALPR--SVFAPEELLAVLI 1607
Query 87 IKMREIAEAYIGKQVKNAVMTVPAYFNDLQR 117
+R E G V+ AV+T+P F LQR
Sbjct 1608 ASLRRRVEQESGCIVEKAVLTIPVCFTHLQR 1700
>PLHA:PHALS_03211:PHALS_03212:NW_020189011.1:89099:91002
Length=1903
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/37 (38%), Positives = 23/37 (62%), Gaps = 0/37 (0%)
Frame = +1
Query 13 QQPKRSSKGRSIASIGNTLINVLIKKEASLVLQANVK 49
QQP + S R + + +LINV +K+E S+ L+ V+
Sbjct 1252 QQPHKKSWDRF*SQMSTSLINVFMKREHSIALRHKVQ 1362
>HYAP:HYAP_00447:HYAP_00448:scaffold_2:943531:960666
Length=17135
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 2/72 (3%)
Frame = +2
Query 15 PKRSSKGRSIASIGNTLINVLIKKEASLVLQANVKHWPLKLTSVASNRLQITVQFKRESN 74
P R + SIA +G + +N L+K+ S V+ + ++H+PL L SVA + + KR ++
Sbjct 8174 PLRYTALLSIA-VGASHLN-LLKQRDSGVVHSMLQHFPLSLRSVAYSGFSLPT*HKRAAH 8347
Query 75 TFQPGEISSMVL 86
SSM L
Sbjct 8348 FVAQTAPSSMYL 8383
>APAS:H257_15245:H257_15246:scaffold_68:126390:127190
Length=800
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 0/22 (0%)
Frame = +1
Query 46 ANVKHWPLKLTSVASNRLQITV 67
A +KHWP+ + +NRL+ TV
Sbjct 226 ATIKHWPIHVGFTVNNRLEFTV 291
Lambda K H a alpha
0.316 0.128 0.345 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 5747664768
Database: OGOB.intergenic.fasta
Posted date: Sep 16, 2018 4:46 PM
Number of letters in database: 626,110,404
Number of sequences in database: 274,424
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40