Full BLAST raw output including alignments follows below the summary table
| Hit Name |
Hit Start |
Hit End |
HSP Length |
HSP Score |
HSP Significance |
| PHSO:scaffold_2 | 5419042 | 5419446 | 135 | 702 | 5e-85 |
| PHKE:scaffold_311 | 15368 | 15760 | 137 | 451 | 4e-51 |
| PHPA:scaffold_60 | 170736 | 171131 | 135 | 418 | 9e-47 |
| PHCA:scaffold_9 | 512115 | 512441 | 116 | 376 | 5e-41 |
| PHIF:NW_003303758.1 | 212350 | 212754 | 138 | 276 | 1e-27 |
| PYVX:scaffold_107 | 39973 | 40191 | 73 | 145 | 6e-10 |
| PYIW:scaffold_2169 | 5069 | 5272 | 69 | 130 | 6e-08 |
| PYAP:scaffold_351 | 7551 | 7730 | 62 | 119 | 2e-06 |
| PYIR:scaffold_690 | 5362 | 5562 | 67 | 109 | 3e-05 |
| PYUU:scaffold_2006 | 818189 | 818410 | 75 | 99 | 0.001 |
| PHSO:scaffold_3 | 6500024 | 6500170 | 51 | 78 | 0.48 |
| SADI:scaffold_24 | 96935 | 97042 | 36 | 73 | 2.5 |
| PYIW:scaffold_203 | 10121 | 10312 | 65 | 72 | 2.6 |
| APIN:scaffold_26 | 188948 | 189205 | 89 | 71 | 4.1 |
| PYAR:scaffold_833 | 225 | 344 | 41 | 69 | 7.1 |
TBLASTN 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: OGOB_genomes.fna
64,241 sequences; 1,297,559,224 total letters
Query= PHYSO_296552
Length=135
Score E
Sequences producing significant alignments: (Bits) Value
PHSO:scaffold_2 275 5e-85
PHKE:scaffold_311 scf_22126_311.1 dna:supercontig supercontig:Phy... 178 4e-51
PHPA:scaffold_60 NW_008649046.1 Phytophthora parasitica INRA-310 ... 165 9e-47
PHCA:scaffold_9 PHYCAscaffold_9 149 5e-41
PHIF:NW_003303758.1 Phytophthora infestans T30-4 supercont1.1 gen... 110 1e-27
PYVX:scaffold_107 pve_scaffold_107 dna:supercontig supercontig:pv... 60.5 6e-10
PYIW:scaffold_2169 piw_scaffold_2169 dna:supercontig supercontig:... 54.7 6e-08
PYAP:scaffold_351 pag1_scaffold_351 dna:supercontig supercontig:p... 50.4 2e-06
PYIR:scaffold_690 pir_scaffold_690 dna:supercontig supercontig:pi... 46.6 3e-05
PYUU:scaffold_2006 scf1117875582006 dna:supercontig supercontig:p... 42.7 0.001
PHSO:scaffold_3 34.7 0.48
SADI:scaffold_24 supercont1.24 dna:supercontig supercontig:Sap_di... 32.7 2.5
PYIW:scaffold_203 piw_scaffold_203 dna:supercontig supercontig:pi... 32.3 2.6
APIN:scaffold_26 supercont1.26 dna:supercontig supercontig:Apha_i... 32.0 4.1
PYAR:scaffold_833 par_scaffold_833 dna:supercontig supercontig:pa... 31.2 7.1
>PHSO:scaffold_2
Length=11587142
Score = 275 bits (702), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 135/135 (100%), Positives = 135/135 (100%), Gaps = 0/135 (0%)
Frame = +1
Query 1 MKKLVNNVDISATNRGGSGRIAVLSPGTVSDCSATSDEDILAEIWAMRSPRLDGASGDDL 60
MKKLVNNVDISATNRGGSGRIAVLSPGTVSDCSATSDEDILAEIWAMRSPRLDGASGDDL
Sbjct 5419042 MKKLVNNVDISATNRGGSGRIAVLSPGTVSDCSATSDEDILAEIWAMRSPRLDGASGDDL 5419221
Query 61 PEVDDELSETAPMEFLFFSGCPDDKNLRVLDVGYRRLRSNPRATRYPVTPSYATSVPIKP 120
PEVDDELSETAPMEFLFFSGCPDDKNLRVLDVGYRRLRSNPRATRYPVTPSYATSVPIKP
Sbjct 5419222 PEVDDELSETAPMEFLFFSGCPDDKNLRVLDVGYRRLRSNPRATRYPVTPSYATSVPIKP 5419401
Query 121 TLVSNMPPLFAPRFG 135
TLVSNMPPLFAPRFG
Sbjct 5419402 TLVSNMPPLFAPRFG 5419446
>PHKE:scaffold_311 scf_22126_311.1 dna:supercontig supercontig:PhyKer238_432v1:scf_22126_311.1:1:43504:1
REF
Length=43504
Score = 178 bits (451), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 90/137 (66%), Positives = 104/137 (76%), Gaps = 8/137 (6%)
Frame = -1
Query 1 MKKLVNNVDISATNRG--GSGRIAVLSPGTVSDCSATSDEDILAEIWAMRSPRLDGASGD 58
M+K+ N +A RG GS RIA+LS G CS SDEDILAEIWA RSP DG + D
Sbjct 15760 MQKIANK---AARQRGSSGSNRIALLSAGV---CSIASDEDILAEIWASRSPSCDGIADD 15599
Query 59 DLPEVDDELSETAPMEFLFFSGCPDDKNLRVLDVGYRRLRSNPRATRYPVTPSYATSVPI 118
DLPEVD++ S++APMEF+FF+GCPDD+NLR LDVGYRR RSN RA R P T SYAT++PI
Sbjct 15598 DLPEVDEDFSQSAPMEFVFFTGCPDDRNLRELDVGYRRHRSNTRAARCPSTSSYATTIPI 15419
Query 119 KPTLVSNMPPLFAPRFG 135
KPTLVS MPPLF PR G
Sbjct 15418 KPTLVSKMPPLFVPRLG 15368
>PHPA:scaffold_60 NW_008649046.1 Phytophthora parasitica INRA-310
unplaced genomic scaffold supercont2.60, whole genome shotgun
sequence
Length=386225
Score = 165 bits (418), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 82/135 (61%), Positives = 98/135 (73%), Gaps = 4/135 (3%)
Frame = -1
Query 1 MKKLVNNVDISATNRGGS-GRIAVLSPGTVSDCSATSDEDILAEIWAMRSPRLDGASGDD 59
M+KL D S RGGS RIA+LS TVSDCS SD++ILAEIWAMRS + S +
Sbjct 171131 MQKLAKKSDRSVRERGGSCNRIALLSTTTVSDCSVMSDQEILAEIWAMRSSSMGRVSDES 170952
Query 60 LPEVDDELSETAPMEFLFFSGCPDDKNLRVLDVGYRRLRSNPRATRYPVTPSYATSVPIK 119
+P VDD+L++TAPMEFLFF+GCPDD + LDV +RR RS R RY TPS+ T+VP+K
Sbjct 170951 MPVVDDKLADTAPMEFLFFTGCPDDNS---LDVRHRRARSKARLARYSATPSFTTTVPVK 170781
Query 120 PTLVSNMPPLFAPRF 134
TLVSNMPPLF PRF
Sbjct 170780 STLVSNMPPLFVPRF 170736
>PHCA:scaffold_9 PHYCAscaffold_9
Length=1114135
Score = 149 bits (376), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 78/116 (67%), Positives = 91/116 (78%), Gaps = 8/116 (7%)
Frame = +3
Query 20 RIAVLSPGTVSDCSATSDEDILAEIWAMRSPRLDGASGDDLPEVDDEL-SETAPMEFLFF 78
+I++LS TVSDC+ TSD++ILAEIWA R L D+LPE+D EL ET P EFLFF
Sbjct 512115 QISLLSV-TVSDCNGTSDQEILAEIWATRPSSL---GHDELPEIDAELVDETRPTEFLFF 512282
Query 79 SGCPDDKNLRVLDVGYRRLRSNPRATRYPVTPSYATSVPIKPTLVSNMPPLFAPRF 134
+GCPDDKNLR LDVGYRRLRSNP Y TPSYAT+VP+KPTLV++MPPLF PRF
Sbjct 512283 TGCPDDKNLRELDVGYRRLRSNP---GYRATPSYATTVPVKPTLVTDMPPLFMPRF 512441
>PHIF:NW_003303758.1 Phytophthora infestans T30-4 supercont1.1
genomic scaffold, whole genome shotgun sequence
Length=6928287
Score = 110 bits (276), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/138 (48%), Positives = 85/138 (62%), Gaps = 8/138 (6%)
Frame = +1
Query 2 KKLVNNVDISATNRGGSG-RIAVLSPGTVSDCSATSDEDILAEIWAMRSPRLDGASGDDL 60
+KL S RG S RIA+LS +V DCS TS+E+ILAEIWAMRS S +D+
Sbjct 212350 QKLARKSHRSLRERGSSSNRIALLSASSVYDCSITSNEEILAEIWAMRSSFTAQVSDEDV 212529
Query 61 PEVDDELSETAPMEFLFFSGCPDDKNLRVLDVGYRRLRSNPRATRYPVTPSY----ATSV 116
DD+ + +AP+EFLFF GCPDD + ++GY R R R+ R TPS+ AT++
Sbjct 212530 SAADDKAASSAPIEFLFFMGCPDDSS---REIGYLRARPKSRSARNTATPSFATAIATTI 212700
Query 117 PIKPTLVSNMPPLFAPRF 134
P+K TLVSNMP L F
Sbjct 212701 PVKSTLVSNMPSLLCHAF 212754
>PYVX:scaffold_107 pve_scaffold_107 dna:supercontig supercontig:pve_scaffolds_v1:pve_scaffold_107:1:52321:1
REF
Length=52321
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (59%), Gaps = 0/73 (0%)
Frame = +1
Query 62 EVDDELSETAPMEFLFFSGCPDDKNLRVLDVGYRRLRSNPRATRYPVTPSYATSVPIKPT 121
+ DD APMEFLFFSGCPDD NL L++ R R + + S + + ++ +
Sbjct 39973 QWDDREEWPAPMEFLFFSGCPDDSNLYRLEMNQHRRRPDAVSREAADRGSASDAAFLRRS 40152
Query 122 LVSNMPPLFAPRF 134
LV +MPP+FAPR
Sbjct 40153 LVYDMPPVFAPRL 40191
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/103 (35%), Positives = 50/103 (49%), Gaps = 8/103 (8%)
Frame = +3
Query 41 LAEIWAMRSPRLDGASGDDLPEVDDELSETAP--MEFLFFSGCPDDKNLRVLDVGYRRLR 98
L+E W + G D+ +L + P MEFLFF CPDD + L++ R R
Sbjct 41403 LSESWESLEASILTTQGSDMSARFSDLRASGPEPMEFLFFPSCPDDLVVNTLEINQFRRR 41582
Query 99 SNPRA--TRYPVTPSYAT----SVPIKPTLVSNMPPLFAPRFG 135
+N + PS AT S+ + TLV++MPPLF PR
Sbjct 41583 ANIASGGATAQSEPSAATSDLDSIRVGRTLVTDMPPLFTPRLS 41711
>PYIW:scaffold_2169 piw_scaffold_2169 dna:supercontig supercontig:piw_scaffolds_v1:piw_scaffold_2169:1:5775:1
REF
Length=5775
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/69 (48%), Positives = 40/69 (58%), Gaps = 9/69 (13%)
Frame = -3
Query 73 MEFLFFSGCPD-DKNLRVLDVGYRRLR-------SNPRATRYPVTPSYATSVPIKPTLVS 124
MEFLFF G PD D NL L+VG+RR + ++ A+ YP S S+ I PTLV
Sbjct 5272 MEFLFFGGSPDADSNLNELEVGHRRFQPHRIDYYNSSAASEYP-RESCTVSIKINPTLVR 5096
Query 125 NMPPLFAPR 133
NMP F PR
Sbjct 5095 NMPRPFNPR 5069
>PYAP:scaffold_351 pag1_scaffold_351 dna:supercontig supercontig:pag1_scaffolds_v1:pag1_scaffold_351:1:31055:1
REF
Length=31055
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 39/62 (63%), Gaps = 4/62 (6%)
Frame = -1
Query 73 MEFLFFSGCPDD--KNLRVLDVGYRRLRSNPRATRYPVTPSYATSVPIKPTLVSNMPPLF 130
MEFLFF G D+ + R + RR R++ A R PV PS S+P+KPTLV N+PP+F
Sbjct 7730 MEFLFFGGSSDESVHSKREIGADLRRHRAHFMAQR-PV-PSCTRSIPVKPTLVRNLPPVF 7557
Query 131 AP 132
P
Sbjct 7556 EP 7551
>PYIR:scaffold_690 pir_scaffold_690 dna:supercontig supercontig:pir_scaffolds_v1:pir_scaffold_690:1:17839:1
REF
Length=17839
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 6/67 (9%)
Frame = -2
Query 73 MEFLFFSGCPDDKNLRVLDVGYRRLR------SNPRATRYPVTPSYATSVPIKPTLVSNM 126
MEFLFF G DD NL L+VG+ + ++ A R S ++ + PTLV NM
Sbjct 5562 MEFLFFGGSVDDYNLNCLEVGHHQFEPDTTAITSNTAERDFQKDSSLITIKVNPTLVHNM 5383
Query 127 PPLFAPR 133
P F PR
Sbjct 5382 PRPFNPR 5362
>PYUU:scaffold_2006 scf1117875582006 dna:supercontig supercontig:pug:scf1117875582006:1:1270039:1
REF
Length=1270039
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 29/75 (39%), Positives = 37/75 (49%), Gaps = 14/75 (19%)
Frame = -1
Query 73 MEFLFFSGCPDDK--NLRVLDVGYRR-----------LRSNPRATRYPVTPSYATSVPIK 119
+EFLFF G PD+ +L L+VG+R +NP A Y S ++ I
Sbjct 818410 LEFLFFGGNPDESESSLMQLEVGHRSRIMNFQTATAPAFANPPAD-YSAADSRTNAIKIN 818234
Query 120 PTLVSNMPPLFAPRF 134
PTLV NMP F P F
Sbjct 818233 PTLVRNMPRPFVPTF 818189
>PHSO:scaffold_3
Length=10773376
Score = 34.7 bits (78), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (57%), Gaps = 2/51 (4%)
Frame = +2
Query 76 LFFSGCPDDKNLRVLDVGYRRLRSNPRATRYPVTPSYATSVPIKPTLVSNM 126
L GC DD+ RV+D+ R+L S RA R +P + + I P+ +SNM
Sbjct 6500024 LVLRGCVDDRKYRVIDL--RQLLSGERAGRAT*SPDWQSRPFILPSSLSNM 6500170
>SADI:scaffold_24 supercont1.24 dna:supercontig supercontig:Sap_diclina_VS20_V1:supercont1.24:1:724546:1
REF
Length=724546
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/36 (42%), Positives = 23/36 (64%), Gaps = 0/36 (0%)
Frame = -1
Query 83 DDKNLRVLDVGYRRLRSNPRATRYPVTPSYATSVPI 118
D K L VLDV R+ P T +P++P++A +VP+
Sbjct 97042 DAKRLVVLDVKSWRIFMIPVDTMHPISPAFAAAVPL 96935
>PYIW:scaffold_203 piw_scaffold_203 dna:supercontig supercontig:piw_scaffolds_v1:piw_scaffold_203:1:25015:1
REF
Length=25015
Score = 32.3 bits (72), Expect = 2.6, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 37/65 (57%), Gaps = 8/65 (12%)
Frame = +2
Query 14 NRGGSGRIAVLSPG-TVSDCSA----TSDEDILAEIWAMRSPRLD--GASGDDLPEVDDE 66
++GG GR+ V+S G T D SA +DE++L + WA R P D G + D D++
Sbjct 10121 SQGGGGRLTVVSGGATREDASAGDHDDNDEELLKKYWA-RKPDADAGGLAIQDKSIDDEQ 10297
Query 67 LSETA 71
LS +A
Sbjct 10298 LSPSA 10312
>APIN:scaffold_26 supercont1.26 dna:supercontig supercontig:Apha_inva_NJM9701_V1:supercont1.26:1:915853:1
REF
Length=915853
Score = 32.0 bits (71), Expect = 4.1, Method: Composition-based stats.
Identities = 29/89 (33%), Positives = 40/89 (45%), Gaps = 17/89 (19%)
Frame = -1
Query 53 DGASGDDLPEVDDELSETAP---------MEFLFFSG---C--PDDKNLRVLDVGYRRLR 98
+G+ G +L + LS+T+ + F +G C P K L V +GY+RLR
Sbjct 189205 EGSEGVNLLRMQISLSDTSSVSHYWWHFKINFFHITGGIYCDWPKQKCLHV--IGYKRLR 189032
Query 99 SNPRATRYPVTPSYATSVPIKPTLVSNMP 127
S R R P P T +P K VS P
Sbjct 189031 SELRRPR-PTAPQGRTHLPSKHPCVSKRP 188948
>PYAR:scaffold_833 par_scaffold_833 dna:supercontig supercontig:par_scaffolds_v1:par_scaffold_833:1:12826:1
REF
Length=12826
Score = 31.2 bits (69), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = -3
Query 94 YRRLRSNPRATRYPVTPSYATSVPIKPTLVSNMPPLFAPRF 134
YR R++ + P++ S ++ I+PTLV +PP+F PRF
Sbjct 344 YRADRADEQXXXXPMS-SATEAIHIRPTLVRGLPPVFEPRF 225
Lambda K H a alpha
0.316 0.135 0.401 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 10636330775
Database: OGOB_genomes.fna
Posted date: Sep 16, 2018 3:46 PM
Number of letters in database: 1,297,559,224
Number of sequences in database: 64,241
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40