BLAST results for CCI44820 - Oomycete Gene Order Browser

Full BLAST raw output including alignments follows below the summary table

Hit Name	Hit Start	Hit End	HSP Length	HSP Score	HSP Significance
ALCA:scaffold_80	18234	18389	156	312	4e-74
ALLA:FR824081	101879	102036	158	161	7e-33
PYIW:scaffold_71	31056	31078	23	41	2.5
PHRA:scaffold_22	306768	306792	25	40	2.5
APAS:scaffold_12	183243	183273	32	40	2.5
APAS:scaffold_6	374400	374419	20	40	2.5
PYIW:scaffold_35	26721	26742	22	39	8.8
PHSO:scaffold_6	4220127	4220148	22	39	8.8
PHKE:scaffold_31	6000	6022	24	39	8.8
PYIW:scaffold_283	13677	13700	24	38	8.8
PHIF:NW_003303667.1	242314	242347	34	38	8.8
PHCA:scaffold_63	74113	74136	24	38	8.8
ALLA:FR824078	108183	108206	24	38	8.8

BLASTN 2.12.0+

Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.

Database: OGOB_genomes.fna
           64,241 sequences; 1,297,559,224 total letters

Query= CCI44820

Length=372
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

ALCA:scaffold_80 AcNc2_CONTIG_80_length_84930 dna:supercontig sup...  282     4e-74
ALLA:FR824081 dna:supercontig supercontig:ENA1:FR824081:1:137019:...  146     7e-33
PYIW:scaffold_71 piw_scaffold_71 dna:supercontig supercontig:piw_...  38.3    2.5  
PHRA:scaffold_22                                                      37.4    2.5  
APAS:scaffold_12 supercont1.12 dna:supercontig supercontig:Apha_a...  37.4    2.5  
APAS:scaffold_6 supercont1.6 dna:supercontig supercontig:Apha_ast...  37.4    2.5  
PYIW:scaffold_35 piw_scaffold_35 dna:supercontig supercontig:piw_...  36.5    8.8  
PHSO:scaffold_6                                                       36.5    8.8  
PHKE:scaffold_31 scf_22126_31.1 dna:supercontig supercontig:PhyKe...  36.5    8.8  
PYIW:scaffold_283 piw_scaffold_283 dna:supercontig supercontig:pi...  35.6    8.8  
PHIF:NW_003303667.1 Phytophthora infestans T30-4 supercont1.92 ge...  35.6    8.8  
PHCA:scaffold_63 PHYCAscaffold_63                                     35.6    8.8  
ALLA:FR824078 dna:supercontig supercontig:ENA1:FR824078:1:142048:...  35.6    8.8

>ALCA:scaffold_80 AcNc2_CONTIG_80_length_84930 dna:supercontig 
supercontig:ASM107853v1:AcNc2_CONTIG_80_length_84930:1:84930:1 
REF
Length=84930

 Score = 282 bits (312),  Expect = 4e-74
 Identities = 156/156 (100%), Gaps = 0/156 (0%)
 Strand=Plus/Plus

Query  217    GATTCAGGCGTGAAGCATTTTGTATACAAAGACGGAGAACGCATAGAAAAGAGCCTCCAG  276
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  18234  GATTCAGGCGTGAAGCATTTTGTATACAAAGACGGAGAACGCATAGAAAAGAGCCTCCAG  18293

Query  277    GCAGGCGAAAAAGCAAAATTTAAGGTGCAAGATATGGAAGAAGGATTGAAACGCCATAAT  336
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  18294  GCAGGCGAAAAAGCAAAATTTAAGGTGCAAGATATGGAAGAAGGATTGAAACGCCATAAT  18353

Query  337    CAACTCATACGAAGGCAATATTTCATGGATCGATAA  372
              ||||||||||||||||||||||||||||||||||||
Sbjct  18354  CAACTCATACGAAGGCAATATTTCATGGATCGATAA  18389

 Score = 259 bits (286),  Expect = 4e-67
 Identities = 143/143 (100%), Gaps = 0/143 (0%)
 Strand=Plus/Plus

Query  1      ATGACTGCTGTCAATGAGACGCGAAGGATCTTCAAAAAGATGGTGAAATTGGCCAAAAGT  60
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  17899  ATGACTGCTGTCAATGAGACGCGAAGGATCTTCAAAAAGATGGTGAAATTGGCCAAAAGT  17958

Query  61     CTTCCAGTCGAGAAGCAAGCTGGTACGTTATTAAACATCCGAGCTGAATTCCGAAAGCAC  120
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  17959  CTTCCAGTCGAGAAGCAAGCTGGTACGTTATTAAACATCCGAGCTGAATTCCGAAAGCAC  18018

Query  121    CGCGACATTAGAGATCCAATACA  143
              |||||||||||||||||||||||
Sbjct  18019  CGCGACATTAGAGATCCAATACA  18041

 Score = 134 bits (148),  Expect = 1e-29
 Identities = 74/74 (100%), Gaps = 0/74 (0%)
 Strand=Plus/Plus

Query  144    ATTAGCGCAACTTTTGGAACGCGCACAATCCACTATTGGTTATTTGAAAATTGTGACACC  203
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  18107  ATTAGCGCAACTTTTGGAACGCGCACAATCCACTATTGGTTATTTGAAAATTGTGACACC  18166

Query  204    GCATAAGCGATCGG  217
              ||||||||||||||
Sbjct  18167  GCATAAGCGATCGG  18180

>ALLA:FR824081 dna:supercontig supercontig:ENA1:FR824081:1:137019:1 
REF
Length=137019

 Score = 146 bits (161),  Expect = 7e-33
 Identities = 127/158 (80%), Gaps = 0/158 (0%)
 Strand=Plus/Plus

Query  214     TCGGATTCAGGCGTGAAGCATTTTGTATACAAAGACGGAGAACGCATAGAAAAGAGCCTC  273
               || ||||| ||||||||||  ||  | |  ||||| ||||||||||||||| |||  || 
Sbjct  101879  TCAGATTCGGGCGTGAAGCGCTTCATGTTTAAAGATGGAGAACGCATAGAAGAGAATCTA  101938

Query  274     CAGGCAGGCGAAAAAGCAAAATTTAAGGTGCAAGATATGGAAGAAGGATTGAAACGCCAT  333
                | ||| |||||| ||| | ||| ||||||||||| || |  ||||||||||||||||||
Sbjct  101939  AAAGCAAGCGAAAGAGCTAGATTCAAGGTGCAAGACATTGGCGAAGGATTGAAACGCCAT  101998

Query  334     AATCAACTCATACGAAGGCAATATTTCATGGATCGATA  371
                |||| ||  |||| |||||| ||||||||||||||||
Sbjct  101999  CATCAGCTTTTACGCAGGCAACATTTCATGGATCGATA  102036

 Score = 98.7 bits (108),  Expect = 9e-19
 Identities = 99/129 (77%), Gaps = 0/129 (0%)
 Strand=Plus/Plus

Query  15      TGAGACGCGAAGGATCTTCAAAAAGATGGTGAAATTGGCCAAAAGTCTTCCAGTCGAGAA  74
               ||| |||||||| |||| ||||| | || | | ||||||||| || ||||||| ||||||
Sbjct  101557  TGATACGCGAAGTATCTACAAAAGGCTGATAAGATTGGCCAAGAGCCTTCCAGCCGAGAA  101616

Query  75      GCAAGCTGGTACGTTATTAAACATCCGAGCTGAATTCCGAAAGCACCGCGACATTAGAGA  134
               |||||| |  ||| |  | ||||| ||  | |||||||| || || || || ||||| ||
Sbjct  101617  GCAAGCAGCAACGCTGCTGAACATTCGCACAGAATTCCGCAAACATCGTGATATTAGTGA  101676

Query  135     TCCAATACA  143
                |||| |||
Sbjct  101677  CCCAACACA  101685

 Score = 81.5 bits (89),  Expect = 2e-13
 Identities = 58/67 (87%), Gaps = 0/67 (0%)
 Strand=Plus/Plus

Query  151     CAACTTTTGGAACGCGCACAATCCACTATTGGTTATTTGAAAATTGTGACACCGCATAAG  210
               || ||||||||||| |||||||| || || || |||||||| ||||| || |||||||||
Sbjct  101756  CAGCTTTTGGAACGTGCACAATCGACAATCGGATATTTGAAGATTGTCACGCCGCATAAG  101815

Query  211     CGATCGG  217
               |||||||
Sbjct  101816  CGATCGG  101822

>PYIW:scaffold_71 piw_scaffold_71 dna:supercontig supercontig:piw_scaffolds_v1:piw_scaffold_71:1:33743:1 
REF
Length=33743

 Score = 38.3 bits (41),  Expect = 2.5
 Identities = 22/23 (96%), Gaps = 0/23 (0%)
 Strand=Plus/Plus

Query  258    CATAGAAAAGAGCCTCCAGGCAG  280
              ||| |||||||||||||||||||
Sbjct  31056  CATCGAAAAGAGCCTCCAGGCAG  31078

>PHRA:scaffold_22
Length=569032

 Score = 37.4 bits (40),  Expect = 2.5
 Identities = 23/25 (92%), Gaps = 0/25 (0%)
 Strand=Plus/Minus

Query  208     AAGCGATCGGATTCAGGCGTGAAGC  232
               ||||||||||||||| ||| |||||
Sbjct  306792  AAGCGATCGGATTCAAGCGAGAAGC  306768

>APAS:scaffold_12 supercont1.12 dna:supercontig supercontig:Apha_asta_APO3_V1:supercont1.12:1:1206637:1 
REF
Length=1206637

 Score = 37.4 bits (40),  Expect = 2.5
 Identities = 28/32 (88%), Gaps = 1/32 (3%)
 Strand=Plus/Plus

Query  155     TTTTGGAACGCGCACAATCCACTATTGGTTAT  186
               ||||||| ||||||||||| | |||| |||||
Sbjct  183243  TTTTGGATCGCGCACAATCAATTATT-GTTAT  183273

>APAS:scaffold_6 supercont1.6 dna:supercontig supercontig:Apha_asta_APO3_V1:supercont1.6:1:1791376:1 
REF
Length=1791376

 Score = 37.4 bits (40),  Expect = 2.5
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  69      CGAGAAGCAAGCTGGTACGT  88
               ||||||||||||||||||||
Sbjct  374419  CGAGAAGCAAGCTGGTACGT  374400

>PYIW:scaffold_35 piw_scaffold_35 dna:supercontig supercontig:piw_scaffolds_v1:piw_scaffold_35:1:42065:1 
REF
Length=42065

 Score = 36.5 bits (39),  Expect = 8.8
 Identities = 21/22 (95%), Gaps = 0/22 (0%)
 Strand=Plus/Minus

Query  147    AGCGCAACTTTTGGAACGCGCA  168
              ||||||||||||| ||||||||
Sbjct  26742  AGCGCAACTTTTGCAACGCGCA  26721

>PHSO:scaffold_6
Length=4785000

 Score = 36.5 bits (39),  Expect = 8.8
 Identities = 21/22 (95%), Gaps = 0/22 (0%)
 Strand=Plus/Minus

Query  97       ATCCGAGCTGAATTCCGAAAGC  118
                |||||||||| |||||||||||
Sbjct  4220148  ATCCGAGCTGTATTCCGAAAGC  4220127

>PHKE:scaffold_31 scf_22126_31.1 dna:supercontig supercontig:PhyKer238_432v1:scf_22126_31.1:1:179192:1 
REF
Length=179192

 Score = 36.5 bits (39),  Expect = 8.8
 Identities = 23/24 (96%), Gaps = 1/24 (4%)
 Strand=Plus/Plus

Query  298   AAGGTGCAAGATATGGAAGAAGGA  321
             |||||||||||||||| |||||||
Sbjct  6000  AAGGTGCAAGATATGG-AGAAGGA  6022

>PYIW:scaffold_283 piw_scaffold_283 dna:supercontig supercontig:piw_scaffolds_v1:piw_scaffold_283:1:21968:1 
REF
Length=21968

 Score = 35.6 bits (38),  Expect = 8.8
 Identities = 22/24 (92%), Gaps = 0/24 (0%)
 Strand=Plus/Plus

Query  91     TTAAACATCCGAGCTGAATTCCGA  114
              ||||||||||| |||||||| |||
Sbjct  13677  TTAAACATCCGGGCTGAATTACGA  13700

>PHIF:NW_003303667.1 Phytophthora infestans T30-4 supercont1.92 
genomic scaffold, whole genome shotgun sequence
Length=551618

 Score = 35.6 bits (38),  Expect = 8.8
 Identities = 28/34 (82%), Gaps = 0/34 (0%)
 Strand=Plus/Minus

Query  10      GTCAATGAGACGCGAAGGATCTTCAAAAAGATGG  43
               |||||| |||||| | | | | ||||||||||||
Sbjct  242347  GTCAATTAGACGCTACGCAGCGTCAAAAAGATGG  242314

>PHCA:scaffold_63 PHYCAscaffold_63
Length=355987

 Score = 35.6 bits (38),  Expect = 8.8
 Identities = 22/24 (92%), Gaps = 0/24 (0%)
 Strand=Plus/Plus

Query  59     GTCTTCCAGTCGAGAAGCAAGCTG  82
              || |||||||||||||| ||||||
Sbjct  74113  GTATTCCAGTCGAGAAGTAAGCTG  74136

>ALLA:FR824078 dna:supercontig supercontig:ENA1:FR824078:1:142048:1 
REF
Length=142048

 Score = 35.6 bits (38),  Expect = 8.8
 Identities = 22/24 (92%), Gaps = 0/24 (0%)
 Strand=Plus/Plus

Query  176     CTATTGGTTATTTGAAAATTGTGA  199
               ||||||| || |||||||||||||
Sbjct  108183  CTATTGGCTAATTGAAAATTGTGA  108206

Lambda      K        H
   0.634    0.408    0.912

Gapped
Lambda      K        H
   0.625    0.410    0.780

Effective search space used: 441788603773

  Database: OGOB_genomes.fna
    Posted date:  Sep 16, 2018  3:46 PM
  Number of letters in database: 1,297,559,224
  Number of sequences in database:  64,241

Matrix: blastn matrix 2 -3
Gap Penalties: Existence: 5, Extension: 2