BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: blastdb
319,881 sequences; 135,609,681 total letters
Query= PPTG_24025
Length=110
Score E
Sequences producing significant alignments: (Bits) Value
PPTG_24025 216 7e-74
PITG_07398 32.7 0.34
PHALS_13311 30.4 2.1
PYU1_G008926 30.4 2.4
PYIW_18799 30.0 2.8
H257_12607 29.3 4.8
CCI50309 29.3 5.0
PYAP_20111 28.9 8.1
>PPTG_24025
Length=110
Score = 216 bits (551), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 110/110 (100%), Positives = 110/110 (100%), Gaps = 0/110 (0%)
Query 1 MLPRCDAGAEECQKVVTSAHKRRRVATPHKGRRDVLCGLGVSPKTGTDVLLGGTEPLLEG 60
MLPRCDAGAEECQKVVTSAHKRRRVATPHKGRRDVLCGLGVSPKTGTDVLLGGTEPLLEG
Sbjct 1 MLPRCDAGAEECQKVVTSAHKRRRVATPHKGRRDVLCGLGVSPKTGTDVLLGGTEPLLEG 60
Query 61 ASVLERVSLKAYSVRVQHLHGRRHLSGLDERRTSLPSSEVERDHGRVRSC 110
ASVLERVSLKAYSVRVQHLHGRRHLSGLDERRTSLPSSEVERDHGRVRSC
Sbjct 61 ASVLERVSLKAYSVRVQHLHGRRHLSGLDERRTSLPSSEVERDHGRVRSC 110
>PITG_07398
Length=357
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/83 (33%), Positives = 35/83 (42%), Gaps = 21/83 (25%)
Query 30 KGRRDVLCGLGVSPKTGTDVLLGGTEPLLE-------------GASVLERVS-------L 69
G R +LC +G SP T DV+LG P LE GA+VL V
Sbjct 61 NGMRSILC-VGTSPGTLDDVMLGVMSPTLEVTRAKASYLDDLSGAAVLSTVKEPTTHDPF 119
Query 70 KAYSVRVQHLHGRRHLSGLDERR 92
K+ +V+ L RR G + R
Sbjct 120 KSVAVKWMELDVRRRSIGFVKNR 142
>PHALS_13311
Length=1792
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Query 9 AEEC---QKVVTSAH---KRRRVATPHKGR---RDVLCGLGVSPKTGTDVLLGGTEPLLE 59
+EEC ++ V +A KR+R+ HK R V+CGL + ++VL T PLL+
Sbjct 1481 SEECLMGKRQVAAAQTLKKRQRLTATHKSYEWARSVICGLSKQAEKFSNVLPAVTSPLLD 1540
>PYU1_G008926
Length=2426
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 20/42 (48%), Gaps = 0/42 (0%)
Query 69 LKAYSVRVQHLHGRRHLSGLDERRTSLPSSEVERDHGRVRSC 110
L Y +RVQH RHLS D R +L V+ VR C
Sbjct 92 LTNYQLRVQHESETRHLSDADATRIALMRVHVKFFKNYVRWC 133
>PYIW_18799
Length=908
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/56 (34%), Positives = 24/56 (43%), Gaps = 0/56 (0%)
Query 1 MLPRCDAGAEECQKVVTSAHKRRRVATPHKGRRDVLCGLGVSPKTGTDVLLGGTEP 56
MLP A EC+ S R +V P RD+ LGVS K G + + P
Sbjct 738 MLPMFYPMARECKVPHASKTSRYQVIQPEFASRDMALHLGVSVKIGERLQIMSIAP 793
>H257_12607
Length=629
Score = 29.3 bits (64), Expect = 4.8, Method: Composition-based stats.
Identities = 20/70 (29%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query 36 LCGLGVSPKTGTDVLLGGTEPLLEGASVLERVSLKAYSVRVQHLHGRRHLSGLDERRTSL 95
C L +SP G GGT P LEGA+++ + + V V + + G + L
Sbjct 497 FCRLRLSPTAG-----GGTFPELEGAALVRELHVYGQLVVVNSVDKSKAQHGGFGTQLML 551
Query 96 PSSEVERDHG 105
+ E+ ++HG
Sbjct 552 KAEEIAQEHG 561
>CCI50309
Length=332
Score = 29.3 bits (64), Expect = 5.0, Method: Composition-based stats.
Identities = 14/43 (33%), Positives = 21/43 (49%), Gaps = 0/43 (0%)
Query 64 LERVSLKAYSVRVQHLHGRRHLSGLDERRTSLPSSEVERDHGR 106
L+RV L+ Y R+ HL G +L R+ S E+ H +
Sbjct 260 LDRVVLRVYETRIHHLFGNEYLLREYSRKESTVEELGEKGHSK 302
>PYAP_20111
Length=1610
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/41 (37%), Positives = 27/41 (66%), Gaps = 1/41 (2%)
Query 63 VLERVSLKAYSVRVQHLHGRRHLSGLDERRTSLPSSEVERD 103
+++R+S +A S+RV+H + RR G +++T LP + E D
Sbjct 232 LMQRISARASSLRVRHAYSRRR-HGHSKQKTELPIYDQEDD 271
Lambda K H a alpha
0.318 0.134 0.399 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3420511542
Database: blastdb
Posted date: Feb 23, 2018 11:26 PM
Number of letters in database: 135,609,681
Number of sequences in database: 319,881
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40