BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: blastdb
319,881 sequences; 135,609,681 total letters
Query= PHYCA_104740
Length=78
Score E
Sequences producing significant alignments: (Bits) Value
PHYCA_104740 97.4 1e-27
PHYCA_131932 52.8 4e-10
PHYCA_133705 38.1 2e-04
PHYCA_113012 37.4 7e-04
PHYCA_97486 37.4 7e-04
PHYCA_133094 37.0 0.001
PHYCA_133405 38.5 0.001
PHYCA_99472 36.6 0.002
PITG_20812 35.4 0.005
PHYCA_102039 31.6 0.23
PHYCA_109385 30.8 0.41
PHYCA_115729 29.6 1.2
>PHYCA_104740
Length=78
Score = 97.4 bits (241), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/78 (100%), Positives = 78/78 (100%), Gaps = 0/78 (0%)
Query 1 LCTCPRSCSFAGATAVSTGDPEsraarasstvvvlarsrarrllptaaNTEAATGARDSA 60
LCTCPRSCSFAGATAVSTGDPESRAARASSTVVVLARSRARRLLPTAANTEAATGARDSA
Sbjct 1 LCTCPRSCSFAGATAVSTGDPESRAARASSTVVVLARSRARRLLPTAANTEAATGARDSA 60
Query 61 SATTFVLPGLYCTSKSNS 78
SATTFVLPGLYCTSKSNS
Sbjct 61 SATTFVLPGLYCTSKSNS 78
>PHYCA_131932
Length=55
Score = 52.8 bits (125), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/30 (83%), Positives = 27/30 (90%), Gaps = 0/30 (0%)
Query 49 NTEAATGARDSASATTFVLPGLYCTSKSNS 78
NT+AATGARD+ASATTFVLPG Y SKSNS
Sbjct 2 NTDAATGARDNASATTFVLPGRYWISKSNS 31
>PHYCA_133705
Length=50
Score = 38.1 bits (87), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/26 (77%), Positives = 21/26 (81%), Gaps = 0/26 (0%)
Query 53 ATGARDSASATTFVLPGLYCTSKSNS 78
A GA +SASATTFVLPG Y TSKS S
Sbjct 1 AVGALESASATTFVLPGRYTTSKSYS 26
>PHYCA_113012
Length=76
Score = 37.4 bits (85), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 19/26 (73%), Gaps = 0/26 (0%)
Query 53 ATGARDSASATTFVLPGLYCTSKSNS 78
A GARD ASATTFV PGLY KS S
Sbjct 15 AAGARDKASATTFVDPGLYSIPKSYS 40
>PHYCA_97486
Length=76
Score = 37.4 bits (85), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 19/26 (73%), Gaps = 0/26 (0%)
Query 53 ATGARDSASATTFVLPGLYCTSKSNS 78
A GARD ASATTFV PGLY KS S
Sbjct 15 AAGARDKASATTFVDPGLYSIPKSYS 40
>PHYCA_133094
Length=87
Score = 37.0 bits (84), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/25 (76%), Positives = 20/25 (80%), Gaps = 0/25 (0%)
Query 54 TGARDSASATTFVLPGLYCTSKSNS 78
TGA D+ASATTFVLPG Y T KS S
Sbjct 39 TGALDNASATTFVLPGRYSTVKSYS 63
>PHYCA_133405
Length=222
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/24 (79%), Positives = 20/24 (83%), Gaps = 0/24 (0%)
Query 55 GARDSASATTFVLPGLYCTSKSNS 78
GARD+ASATTFV PG Y TSKS S
Sbjct 175 GARDNASATTFVFPGRYSTSKSYS 198
>PHYCA_99472
Length=113
Score = 36.6 bits (83), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 19/26 (73%), Gaps = 0/26 (0%)
Query 53 ATGARDSASATTFVLPGLYCTSKSNS 78
A GARD ASATTFV PGLY KS S
Sbjct 81 AAGARDRASATTFVDPGLYSILKSYS 106
>PITG_20812
Length=96
Score = 35.4 bits (80), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/28 (68%), Positives = 21/28 (75%), Gaps = 0/28 (0%)
Query 51 EAATGARDSASATTFVLPGLYCTSKSNS 78
EAA AR+SASATTFV+PG Y S S S
Sbjct 47 EAAADARESASATTFVVPGRYKISNSYS 74
>PHYCA_102039
Length=163
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/24 (67%), Positives = 17/24 (71%), Gaps = 0/24 (0%)
Query 55 GARDSASATTFVLPGLYCTSKSNS 78
GAR+SASATTFV P Y KS S
Sbjct 84 GARESASATTFVAPDRYSMEKSYS 107
>PHYCA_109385
Length=124
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/24 (67%), Positives = 17/24 (71%), Gaps = 0/24 (0%)
Query 55 GARDSASATTFVLPGLYCTSKSNS 78
GARD+ASATT V PG Y KS S
Sbjct 77 GARDNASATTLVDPGRYSMLKSYS 100
>PHYCA_115729
Length=186
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/26 (62%), Positives = 17/26 (65%), Gaps = 0/26 (0%)
Query 53 ATGARDSASATTFVLPGLYCTSKSNS 78
A GA D ASATTFV PG + KS S
Sbjct 105 AAGALDKASATTFVDPGRFSILKSYS 130
Lambda K H a alpha
0.311 0.121 0.365 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3349237668
Database: blastdb
Posted date: Feb 23, 2018 11:26 PM
Number of letters in database: 135,609,681
Number of sequences in database: 319,881
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40