Multiple Sequence Alignment for Pillar 44966 - Oomycete Gene Order Browser

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Raw alignment output

MUSCLE (3.8) multiple sequence alignment


PHYCA_537323      MRF--LRGSALFFPLLLLSLVLCVTGQRRLDAGLGEGQVVQHPPPFFIVDGLDFQGMALA
PYVX_18173        MRSSPLASAALGVALASAGAVELCFAQRRLDSGLGEGQVVLYPPPFFVVDGMDYRGSPVA
                  **   * .:** ..*   . *    .*****:******** :*****:***:*:.* .:*

PHYCA_537323      YLQEQGVNTSIEAQSWMEQHGYTSLRAMLDDESLYQVTEEAIFECGLTSPKTETQPIPTN
PYVX_18173        YLEQQGVHTAIEAQTWLAERGYATLRALMDDDGLYSVTEEGLFDCGLTFPNTETQPIPTN
                  **::***:*:****:*: :.**::***::**:.**.****.:*:**** *:*********

PHYCA_537323      NSFQTSGYTLDGPCEVWLDDTKVSAGRNCHTEFPQGQHQVDYSSCGESCTLSWYWLGIKY
PYVX_18173        GSFITSGYTLDGPCEIWIDNTLALAGRNCHTEFPEGHHTIDYSVCGESCRVSWFWLGIKY
                  .** ***********:*:*:* . **********:*:* :*** ***** :**:******

PHYCA_537323      VEGIYSWQVYKNCVGL--------------------------------------------
PYVX_18173        QGERYSWQVFKNCINLSASALVTMIGLQHPRSALPALALAAAAFVATNAPQAMAHQLVIL
                      *****:***:.*                                            

PHYCA_537323      ------------------------------------------------------------
PYVX_18173        PAPTYTVEGKDNRWKPLAFLEGQNFSTTDDFVGYLDANGFDSLRAFMDDDSLYSVNASAD
                                                                              

PHYCA_537323      ------------------------------------------------------------
PYVX_18173        FRCGFTDPDAAPQPIPDGIMRSTGYTHDGPCEVWLDDTRVLQHDNCHEVISGKTYDLDYS
                                                                              

PHYCA_537323      -----------------------------------GTAATA-------------------
PYVX_18173        ACNGSCTLYWYWLGVRYLKQVYSWQVYKACVPISDGSAAASSEDSASGEVEETAAPSVGS
                                                     *:**::                   

PHYCA_537323      ------------------------------------------------------------
PYVX_18173        SSSDAASVGGEADETSPSSSGSDASVGGEADEEAAGSADAETSAPGSSATEAPSPSTAEP
                                                                              

PHYCA_537323      --------------------
PYVX_18173        EESDETSSGTTPSKCRAKSA

FASTA format

>PHYCA_537323
MRF--LRGSALFFPLLLLSLVLCVTGQRRLDAGLGEGQVVQHPPPFFIVDGLDFQGMALA
YLQEQGVNTSIEAQSWMEQHGYTSLRAMLDDESLYQVTEEAIFECGLTSPKTETQPIPTN
NSFQTSGYTLDGPCEVWLDDTKVSAGRNCHTEFPQGQHQVDYSSCGESCTLSWYWLGIKY
VEGIYSWQVYKNCVGL--------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----------------------------------GTAATA-------------------
------------------------------------------------------------
--------------------
>PYVX_18173
MRSSPLASAALGVALASAGAVELCFAQRRLDSGLGEGQVVLYPPPFFVVDGMDYRGSPVA
YLEQQGVHTAIEAQTWLAERGYATLRALMDDDGLYSVTEEGLFDCGLTFPNTETQPIPTN
GSFITSGYTLDGPCEIWIDNTLALAGRNCHTEFPEGHHTIDYSVCGESCRVSWFWLGIKY
QGERYSWQVFKNCINLSASALVTMIGLQHPRSALPALALAAAAFVATNAPQAMAHQLVIL
PAPTYTVEGKDNRWKPLAFLEGQNFSTTDDFVGYLDANGFDSLRAFMDDDSLYSVNASAD
FRCGFTDPDAAPQPIPDGIMRSTGYTHDGPCEVWLDDTRVLQHDNCHEVISGKTYDLDYS
ACNGSCTLYWYWLGVRYLKQVYSWQVYKACVPISDGSAAASSEDSASGEVEETAAPSVGS
SSSDAASVGGEADETSPSSSGSDASVGGEADEEAAGSADAETSAPGSSATEAPSPSTAEP
EESDETSSGTTPSKCRAKSA