Newick Format 
(PYAR_24096:0.17228,(PYIW_18788:0.60425,PYU1_G0017:0.22041):0.49380,PYAP_22273:0.18152);

Protein sequences → MUSCLE → trimAl (automated1) → PHYLIP Neighbor

Root the phylogeny or hide taxa by clicking on nodes

Phylogeny (unrooted) rendered using phylotree.js

Reconstruct this phylogeny using PHYLIP Neighbor, FastTree, IQ-TREE (+ ModelFinder) or PhyML?