Newick Format
(SDRG_01763:0.06682,((CCA22843:0.21372,CCI44111:0.17508):0.40038,(((PYU1_G0017:0.12253,(PYIR_13418:0.06503,PYIW_19969:0.07133):0.06171):0.15705,(PYAP_17763:0.21032,PYAR_13571:0.18763):0.21851):0.04270,(PYVX_23590:0.37922,(HYAP_07104:0.22666,(PHALS_0647:0.16904,(PHYKE_8395:0.15706,(PHYSO_3489:0.11291,((PHYRA_8109:0.07446,(PITG_18458:0.03894,PPTG_17129:0.02016):0.02989):0.00309,PHYCA_5114:0.05086):0.00609):0.00478):0.01218):0.01821):0.21615):0.02296):0.21456):0.95800,SPRG_06355:0.02156);

Protein sequences → MUSCLE → trimAl (automated1) → PHYLIP Neighbor

Root the phylogeny or hide taxa by clicking on nodes

Phylogeny (unrooted) rendered using phylotree.js

Reconstruct this phylogeny using PHYLIP Neighbor, FastTree, IQ-TREE (+ ModelFinder) or PhyML?