Newick Format
(CCI44820:0.17277,(((SPRG_06335:0.03607,SDRG_01782:0.03126):0.21634,(H257_06293:0.08071,H310_09224:0.13432):0.21158):0.25890,((PYAP_17747:0.24160,(PYU1_G0017:0.15420,(PYIR_13454:0.07111,PYIW_19970:0.07401):0.12338):0.07344):0.04557,(PYVX_18180:0.17000,(HYAP_07103:0.12608,((((PHALS_0647:0.11200,(PITG_18455:0.04560,PPTG_17126:0.04974):0.02218):0.02165,PHYCA_1183:0.05452):0.01545,(PHYKE_8392:0.11097,PHYSO_3211:0.05328):0.00771):0.00609,PHYRA_9590:0.07306):0.00997):0.11425):0.06250):0.05975):0.26331,CCA17542:0.08792);

Protein sequences → MUSCLE → trimAl (automated1) → PHYLIP Neighbor

Root the phylogeny or hide taxa by clicking on nodes

Phylogeny (unrooted) rendered using phylotree.js

Reconstruct this phylogeny using PHYLIP Neighbor, FastTree, IQ-TREE (+ ModelFinder) or PhyML?