Newick Format
(HYAP_07103:0.162169706,(PHYKE_8392:0.105479231,((PHALS_06479:0.129094218,(PITG_18455:0.045922058,PPTG_17126:0.053577221)0.835:0.022193514)0.922:0.031477476,PHYSO_321155:0.047302201)0.901:0.023240324)0.771:0.000000005,(PHYCA_11834:0.070809926,(PHYRA_95903:0.043833356,(PYVX_18180:0.175434161,((((PYU1_G001736:0.163020642,((SPRG_06335:0.021279047,SDRG_01782:0.046823699)0.804:0.135870457,(H257_06293:0.084164552,H310_09224:0.145278889)0.993:0.407326901)1.000:0.560318907)0.529:0.058629975,(PYIR_13454:0.041005709,PYIW_19970:0.111135978)0.938:0.104435495)0.905:0.139917203,(CCA17542:0.066333141,CCI44820:0.205732597)1.000:0.499074113)0.167:0.082131884,PYAP_17747:0.260851790)0.827:0.123155561)0.992:0.178142607)0.847:0.036125348)0.184:0.036013446);

Protein sequences → MUSCLE → trimAl (automated1) → FastTree (Double Precision)

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Phylogeny (unrooted) rendered using phylotree.js

Reconstruct this phylogeny using PHYLIP Neighbor, FastTree, IQ-TREE (+ ModelFinder) or PhyML?