Newick Format
(PHYRA_8110:0.10256,(PHYCA_1294:0.08901,(PITG_18453:0.07297,PPTG_17125:0.03111):0.02888):0.07383,PHALS_1260:0.96793);

Protein sequences → MUSCLE → trimAl (automated1) → PHYLIP Neighbor

Root the phylogeny or hide taxa by clicking on nodes

Phylogeny (unrooted) rendered using phylotree.js

Reconstruct this phylogeny using PHYLIP Neighbor, FastTree, IQ-TREE (+ ModelFinder) or PhyML?