Newick Format
(PYIR_26626:0.16994265,PYU1_G001740:0.20173378,(PHYCA_129425:0.04872400,(PHYSO_284086:0.09750523,((PHYKE_8389:0.02248888,(PYVX_18175:0.47689877,PHYRA_81106:0.03764311)0.972305:0.04944125)1.000000:0.07614155,(PPTG_17122:0.02712951,PITG_18450:0.13669847)0.999902:0.04876344)0.934885:0.01890262)0.537872:0.02361580)1.000000:0.48743584);

Protein sequences → MUSCLE → trimAl (automated1) → PhyML (LG Model)

Root the phylogeny or hide taxa by clicking on nodes

Phylogeny (unrooted) rendered using phylotree.js

Reconstruct this phylogeny using PHYLIP Neighbor, FastTree, IQ-TREE (+ ModelFinder) or PhyML?