Newick Format
(PYAP_22273:0.1518997677,PYAR_24096:0.1921745823,(PYIW_18788:0.6101876953,PYU1_G001739:0.1879668179):0.5113831442);

Protein sequences → MUSCLE → trimAl (automated1) → IQ-TREE (Automatic model selection using ModelFinder)

Root the phylogeny or hide taxa by clicking on nodes

Phylogeny (unrooted) rendered using phylotree.js

Reconstruct this phylogeny using PHYLIP Neighbor, FastTree, IQ-TREE (+ ModelFinder) or PhyML?


IQ-TREE Log
IQ-TREE 1.6.11 built Jun  6 2019

Input file name: seq.aln-trimal
Type of analysis: ModelFinder + tree reconstruction
Random seed number: 370860

REFERENCES
----------

To cite ModelFinder please use: 

Subha Kalyaanamoorthy, Bui Quang Minh, Thomas KF Wong, Arndt von Haeseler,
and Lars S Jermiin (2017) ModelFinder: Fast model selection for
accurate phylogenetic estimates. Nature Methods, 14:587–589.
https://doi.org/10.1038/nmeth.4285

To cite IQ-TREE please use:

Lam-Tung Nguyen, Heiko A. Schmidt, Arndt von Haeseler, and Bui Quang Minh
(2015) IQ-TREE: A fast and effective stochastic algorithm for estimating
maximum likelihood phylogenies. Mol Biol Evol, 32:268-274.
https://doi.org/10.1093/molbev/msu300

SEQUENCE ALIGNMENT
------------------

Input data: 4 sequences with 242 amino-acid sites
Number of constant sites: 65 (= 26.8595% of all sites)
Number of invariant (constant or ambiguous constant) sites: 65 (= 26.8595% of all sites)
Number of parsimony informative sites: 37
Number of distinct site patterns: 190

ModelFinder
-----------

Best-fit model according to BIC: WAG

List of models sorted by BIC scores: 

Model             LogL          AIC      w-AIC      AICc     w-AICc       BIC      w-BIC
WAG              -1889.1246   3788.2492 - 0.0016   3788.5034 - 0.0242   3805.6939 + 0.5686
WAG+I            -1887.0377   3786.0754 - 0.0046   3786.4328 + 0.0682   3807.0090 + 0.2946
WAG+G4           -1888.0084   3788.0168 - 0.0018   3788.3743 - 0.0258   3808.9505 + 0.1116
WAG+I+G4         -1887.0613   3788.1225 - 0.0017   3788.6012 - 0.0231   3812.5451 - 0.0185
WAG+R2           -1888.1583   3790.3167 - 0.0006   3790.7953 - 0.0077   3814.7392 - 0.0062
DCMut+I          -1894.3273   3800.6545 - 0.0000   3801.0120 - 0.0000   3821.5881 - 0.0002
Dayhoff+I        -1894.3340   3800.6681 - 0.0000   3801.0255 - 0.0000   3821.6017 - 0.0002
DCMut+G4         -1895.6051   3803.2101 - 0.0000   3803.5676 - 0.0000   3824.1438 - 0.0001
Dayhoff+G4       -1895.6183   3803.2365 - 0.0000   3803.5940 - 0.0000   3824.1702 - 0.0001
WAG+R3           -1887.8622   3793.7244 - 0.0001   3794.5003 - 0.0012   3825.1249 - 0.0000
DCMut            -1899.7062   3809.4124 - 0.0000   3809.6667 - 0.0000   3826.8571 - 0.0000
Dayhoff          -1899.7919   3809.5838 - 0.0000   3809.8380 - 0.0000   3827.0284 - 0.0000
Dayhoff+I+G4     -1894.3519   3802.7039 - 0.0000   3803.1825 - 0.0000   3827.1264 - 0.0000
DCMut+I+G4       -1894.7267   3803.4535 - 0.0000   3803.9321 - 0.0000   3827.8761 - 0.0000
DCMut+R2         -1895.6454   3805.2908 - 0.0000   3805.7694 - 0.0000   3829.7133 - 0.0000
Dayhoff+R2       -1895.6482   3805.2963 - 0.0000   3805.7749 - 0.0000   3829.7189 - 0.0000
VT               -1904.0225   3818.0451 - 0.0000   3818.2993 - 0.0000   3835.4898 - 0.0000
VT+I             -1903.1176   3818.2353 - 0.0000   3818.5927 - 0.0000   3839.1689 - 0.0000
DCMut+R3         -1895.1214   3808.2428 - 0.0000   3809.0187 - 0.0000   3839.6433 - 0.0000
Dayhoff+R3       -1895.2372   3808.4744 - 0.0000   3809.2502 - 0.0000   3839.8748 - 0.0000
VT+G4            -1903.6651   3819.3301 - 0.0000   3819.6875 - 0.0000   3840.2637 - 0.0000
VT+I+G4          -1903.1220   3820.2441 - 0.0000   3820.7227 - 0.0000   3844.6667 - 0.0000
VT+R2            -1903.7072   3821.4144 - 0.0000   3821.8930 - 0.0000   3845.8370 - 0.0000
JTTDCMut+I       -1910.3601   3832.7203 - 0.0000   3833.0777 - 0.0000   3853.6539 - 0.0000
JTTDCMut         -1913.2527   3836.5055 - 0.0000   3836.7597 - 0.0000   3853.9501 - 0.0000
LG+G4            -1910.5252   3833.0504 - 0.0000   3833.4079 - 0.0000   3853.9840 - 0.0000
JTTDCMut+G4      -1910.7662   3833.5323 - 0.0000   3833.8898 - 0.0000   3854.4659 - 0.0000
LG+I             -1910.7946   3833.5893 - 0.0000   3833.9467 - 0.0000   3854.5229 - 0.0000
JTT+I            -1910.8941   3833.7882 - 0.0000   3834.1456 - 0.0000   3854.7218 - 0.0000
JTT              -1913.7647   3837.5294 - 0.0000   3837.7837 - 0.0000   3854.9741 - 0.0000
JTT+G4           -1911.2836   3834.5671 - 0.0000   3834.9246 - 0.0000   3855.5007 - 0.0000
LG               -1914.1821   3838.3643 - 0.0000   3838.6185 - 0.0000   3855.8089 - 0.0000
VT+R3            -1903.6160   3825.2321 - 0.0000   3826.0080 - 0.0000   3856.6325 - 0.0000
JTTDCMut+I+G4    -1910.3266   3834.6532 - 0.0000   3835.1318 - 0.0000   3859.0758 - 0.0000
LG+I+G4          -1910.3778   3834.7557 - 0.0000   3835.2343 - 0.0000   3859.1782 - 0.0000
LG+R2            -1910.6081   3835.2161 - 0.0000   3835.6947 - 0.0000   3859.6387 - 0.0000
JTTDCMut+R2      -1910.8499   3835.6998 - 0.0000   3836.1785 - 0.0000   3860.1224 - 0.0000
JTT+I+G4         -1910.8647   3835.7293 - 0.0000   3836.2080 - 0.0000   3860.1519 - 0.0000
JTT+R2           -1911.4576   3836.9152 - 0.0000   3837.3938 - 0.0000   3861.3377 - 0.0000
WAG+F            -1865.5027   3779.0054 + 0.1590   3784.5353 + 0.1761   3862.7399 - 0.0000
WAG+F+I          -1863.5103   3777.0207 + 0.4289   3783.0392 + 0.3720   3864.2441 - 0.0000
PMB              -1918.6527   3847.3054 - 0.0000   3847.5596 - 0.0000   3864.7501 - 0.0000
WAG+F+G4         -1864.3967   3778.7933 + 0.1768   3784.8119 + 0.1533   3866.0168 - 0.0000
Blosum62         -1919.5257   3849.0514 - 0.0000   3849.3057 - 0.0000   3866.4961 - 0.0000
PMB+I            -1917.8743   3847.7486 - 0.0000   3848.1061 - 0.0000   3868.6822 - 0.0000
PMB+G4           -1918.3432   3848.6864 - 0.0000   3849.0438 - 0.0000   3869.6200 - 0.0000
WAG+F+I+G4       -1863.5162   3779.0324 + 0.1569   3785.5626 + 0.1053   3869.7447 - 0.0000
JTTDCMut+R3      -1910.2515   3838.5029 - 0.0000   3839.2788 - 0.0000   3869.9034 - 0.0000
Blosum62+I       -1918.5905   3849.1809 - 0.0000   3849.5384 - 0.0000   3870.1146 - 0.0000
LG+R3            -1910.4063   3838.8125 - 0.0000   3839.5884 - 0.0000   3870.2130 - 0.0000
Blosum62+G4      -1919.1386   3850.2771 - 0.0000   3850.6345 - 0.0000   3871.2107 - 0.0000
JTT+R3           -1911.1710   3840.3421 - 0.0000   3841.1180 - 0.0000   3871.7425 - 0.0000
WAG+F+R2         -1864.5219   3781.0439 + 0.0574   3787.5741 - 0.0385   3871.7563 - 0.0000
PMB+I+G4         -1917.8848   3849.7697 - 0.0000   3850.2483 - 0.0000   3874.1922 - 0.0000
PMB+R2           -1918.3679   3850.7358 - 0.0000   3851.2145 - 0.0000   3875.1584 - 0.0000
Blosum62+I+G4    -1918.6349   3851.2698 - 0.0000   3851.7485 - 0.0000   3875.6924 - 0.0000
Blosum62+R2      -1919.1136   3852.2273 - 0.0000   3852.7059 - 0.0000   3876.6498 - 0.0000
VT+F             -1873.1069   3794.2139 - 0.0001   3799.7438 - 0.0001   3877.9484 - 0.0000
VT+F+I           -1872.1099   3794.2198 - 0.0001   3800.2384 - 0.0001   3881.4433 - 0.0000
WAG+F+R3         -1864.2279   3784.4559 - 0.0104   3792.0803 - 0.0040   3882.1461 - 0.0000
VT+F+G4          -1872.6665   3795.3329 - 0.0000   3801.3514 - 0.0000   3882.5564 - 0.0000
FLU+F+I          -1873.3092   3796.6183 - 0.0000   3802.6368 - 0.0000   3883.8418 - 0.0000
DCMut+F+I        -1873.7932   3797.5864 - 0.0000   3803.6049 - 0.0000   3884.8098 - 0.0000
Dayhoff+F+I      -1873.8372   3797.6745 - 0.0000   3803.6930 - 0.0000   3884.8979 - 0.0000
Blosum62+F       -1876.6617   3801.3233 - 0.0000   3806.8533 - 0.0000   3885.0579 - 0.0000
FLU+F+G4         -1874.0195   3798.0391 - 0.0000   3804.0576 - 0.0000   3885.2625 - 0.0000
PMB+R3           -1918.2366   3854.4733 - 0.0000   3855.2491 - 0.0000   3885.8737 - 0.0000
DCMut+F+G4       -1874.5336   3799.0672 - 0.0000   3805.0857 - 0.0000   3886.2906 - 0.0000
Dayhoff+F+G4     -1874.5748   3799.1495 - 0.0000   3805.1681 - 0.0000   3886.3730 - 0.0000
rtREV+G4         -1926.9518   3865.9036 - 0.0000   3866.2610 - 0.0000   3886.8372 - 0.0000
Blosum62+R3      -1918.7190   3855.4379 - 0.0000   3856.2138 - 0.0000   3886.8384 - 0.0000
VT+F+I+G4        -1872.1147   3796.2293 - 0.0000   3802.7596 - 0.0000   3886.9417 - 0.0000
FLU+I            -1927.0509   3866.1017 - 0.0000   3866.4592 - 0.0000   3887.0354 - 0.0000
PMB+F            -1877.8317   3803.6634 - 0.0000   3809.1933 - 0.0000   3887.3979 - 0.0000
rtREV+I          -1927.5284   3867.0568 - 0.0000   3867.4143 - 0.0000   3887.9905 - 0.0000
VT+F+R2          -1872.6742   3797.3483 - 0.0000   3803.8786 - 0.0000   3888.0607 - 0.0000
Blosum62+F+I     -1875.7195   3801.4390 - 0.0000   3807.4575 - 0.0000   3888.6624 - 0.0000
FLU+G4           -1927.9559   3867.9118 - 0.0000   3868.2692 - 0.0000   3888.8454 - 0.0000
FLU+F+I+G4       -1873.1184   3798.2367 - 0.0000   3804.7669 - 0.0000   3888.9491 - 0.0000
Blosum62+F+G4    -1876.2181   3802.4362 - 0.0000   3808.4548 - 0.0000   3889.6597 - 0.0000
FLU+F            -1879.0733   3806.1467 - 0.0000   3811.6766 - 0.0000   3889.8812 - 0.0000
LG+F+G4          -1876.3850   3802.7701 - 0.0000   3808.7886 - 0.0000   3889.9935 - 0.0000
Dayhoff+F+I+G4   -1873.7814   3799.5629 - 0.0000   3806.0931 - 0.0000   3890.2753 - 0.0000
DCMut+F          -1879.3221   3806.6441 - 0.0000   3812.1741 - 0.0000   3890.3786 - 0.0000
DCMut+F+I+G4     -1873.8359   3799.6717 - 0.0000   3806.2020 - 0.0000   3890.3841 - 0.0000
Dayhoff+F        -1879.4464   3806.8929 - 0.0000   3812.4229 - 0.0000   3890.6274 - 0.0000
LG+F+I           -1876.8682   3803.7365 - 0.0000   3809.7550 - 0.0000   3890.9599 - 0.0000
rtREV            -1931.7581   3873.5161 - 0.0000   3873.7704 - 0.0000   3890.9608 - 0.0000
FLU+F+R2         -1874.1679   3800.3358 - 0.0000   3806.8660 - 0.0000   3891.0482 - 0.0000
PMB+F+I          -1877.0637   3804.1274 - 0.0000   3810.1459 - 0.0000   3891.3508 - 0.0000
DCMut+F+R2       -1874.6645   3801.3290 - 0.0000   3807.8593 - 0.0000   3892.0414 - 0.0000
Dayhoff+F+R2     -1874.6903   3801.3805 - 0.0000   3807.9107 - 0.0000   3892.0929 - 0.0000
rtREV+I+G4       -1926.8467   3867.6934 - 0.0000   3868.1720 - 0.0000   3892.1160 - 0.0000
PMB+F+G4         -1877.5192   3805.0385 - 0.0000   3811.0570 - 0.0000   3892.2619 - 0.0000
FLU+I+G4         -1926.9500   3867.8999 - 0.0000   3868.3786 - 0.0000   3892.3225 - 0.0000
LG+F             -1880.3985   3808.7970 - 0.0000   3814.3270 - 0.0000   3892.5315 - 0.0000
rtREV+R2         -1927.1409   3868.2818 - 0.0000   3868.7605 - 0.0000   3892.7044 - 0.0000
cpREV+I          -1929.9087   3871.8175 - 0.0000   3872.1749 - 0.0000   3892.7511 - 0.0000
FLU              -1933.3433   3876.6866 - 0.0000   3876.9408 - 0.0000   3894.1313 - 0.0000
Blosum62+F+I+G4  -1875.7560   3803.5121 - 0.0000   3810.0423 - 0.0000   3894.2245 - 0.0000
FLU+R2           -1928.0554   3870.1107 - 0.0000   3870.5894 - 0.0000   3894.5333 - 0.0000
cpREV+G4         -1931.0498   3874.0996 - 0.0000   3874.4570 - 0.0000   3895.0332 - 0.0000
Blosum62+F+R2    -1876.1742   3804.3484 - 0.0000   3810.8786 - 0.0000   3895.0607 - 0.0000
LG+F+I+G4        -1876.2894   3804.5788 - 0.0000   3811.1090 - 0.0000   3895.2912 - 0.0000
LG+F+R2          -1876.5331   3805.0662 - 0.0000   3811.5965 - 0.0000   3895.7786 - 0.0000
cpREV            -1934.1691   3878.3381 - 0.0000   3878.5923 - 0.0000   3895.7828 - 0.0000
PMB+F+I+G4       -1877.0745   3806.1489 - 0.0000   3812.6792 - 0.0000   3896.8613 - 0.0000
cpREV+F+I        -1879.9300   3809.8601 - 0.0000   3815.8786 - 0.0000   3897.0835 - 0.0000
PMB+F+R2         -1877.5264   3807.0529 - 0.0000   3813.5831 - 0.0000   3897.7652 - 0.0000
FLU+F+R3         -1872.2256   3800.4512 - 0.0000   3808.0756 - 0.0000   3898.1415 - 0.0000
cpREV+I+G4       -1930.0559   3874.1118 - 0.0000   3874.5904 - 0.0000   3898.5343 - 0.0000
VT+F+R3          -1872.5759   3801.1519 - 0.0000   3808.7763 - 0.0000   3898.8421 - 0.0000
cpREV+F+G4       -1881.1970   3812.3940 - 0.0000   3818.4125 - 0.0000   3899.6174 - 0.0000
cpREV+R2         -1931.3560   3876.7119 - 0.0000   3877.1905 - 0.0000   3901.1345 - 0.0000
FLU+R3           -1926.2630   3870.5259 - 0.0000   3871.3018 - 0.0000   3901.9264 - 0.0000
DCMut+F+R3       -1874.1494   3804.2989 - 0.0000   3811.9233 - 0.0000   3901.9891 - 0.0000
Dayhoff+F+R3     -1874.3423   3804.6847 - 0.0000   3812.3091 - 0.0000   3902.3749 - 0.0000
cpREV+F          -1885.4115   3818.8230 - 0.0000   3824.3530 - 0.0000   3902.5576 - 0.0000
cpREV+F+I+G4     -1880.0332   3812.0663 - 0.0000   3818.5966 - 0.0000   3902.7787 - 0.0000
rtREV+R3         -1926.7107   3871.4213 - 0.0000   3872.1972 - 0.0000   3902.8218 - 0.0000
JTTDCMut+F+G4    -1883.5927   3817.1854 - 0.0000   3823.2039 - 0.0000   3904.4088 - 0.0000
JTTDCMut+F+I     -1883.5928   3817.1857 - 0.0000   3823.2042 - 0.0000   3904.4091 - 0.0000
JTT+F+I          -1883.7882   3817.5764 - 0.0000   3823.5949 - 0.0000   3904.7999 - 0.0000
JTT+F+G4         -1883.7905   3817.5809 - 0.0000   3823.5994 - 0.0000   3904.8044 - 0.0000
Blosum62+F+R3    -1875.8071   3807.6142 - 0.0000   3815.2386 - 0.0000   3905.3044 - 0.0000
JTTDCMut+F       -1886.9253   3821.8506 - 0.0000   3827.3806 - 0.0000   3905.5851 - 0.0000
cpREV+F+R2       -1881.5228   3815.0455 - 0.0000   3821.5758 - 0.0000   3905.7579 - 0.0000
JTT+F            -1887.1366   3822.2732 - 0.0000   3827.8031 - 0.0000   3906.0077 - 0.0000
LG+F+R3          -1876.2705   3808.5409 - 0.0000   3816.1653 - 0.0000   3906.2312 - 0.0000
PMB+F+R3         -1877.4020   3810.8040 - 0.0000   3818.4284 - 0.0000   3908.4942 - 0.0000
rtREV+F+G4       -1885.6502   3821.3004 - 0.0000   3827.3189 - 0.0000   3908.5238 - 0.0000
JTTDCMut+F+I+G4  -1883.3404   3818.6807 - 0.0000   3825.2110 - 0.0000   3909.3931 - 0.0000
JTT+F+I+G4       -1883.5253   3819.0506 - 0.0000   3825.5808 - 0.0000   3909.7629 - 0.0000
cpREV+R3         -1930.4193   3878.8385 - 0.0000   3879.6144 - 0.0000   3910.2390 - 0.0000
JTTDCMut+F+R2    -1883.7788   3819.5576 - 0.0000   3826.0879 - 0.0000   3910.2700 - 0.0000
rtREV+F+I        -1886.6056   3823.2112 - 0.0000   3829.2297 - 0.0000   3910.4346 - 0.0000
JTT+F+R2         -1883.9578   3819.9155 - 0.0000   3826.4457 - 0.0000   3910.6279 - 0.0000
rtREV+F+I+G4     -1885.5687   3823.1374 - 0.0000   3829.6676 - 0.0000   3913.8498 - 0.0000
rtREV+F+R2       -1885.9363   3823.8725 - 0.0000   3830.4027 - 0.0000   3914.5849 - 0.0000
cpREV+F+R3       -1880.4582   3816.9164 - 0.0000   3824.5408 - 0.0000   3914.6066 - 0.0000
rtREV+F          -1892.1376   3832.2752 - 0.0000   3837.8051 - 0.0000   3916.0097 - 0.0000
JTTDCMut+F+R3    -1882.8503   3821.7006 - 0.0000   3829.3250 - 0.0000   3919.3908 - 0.0000
JTT+F+R3         -1883.5015   3823.0030 - 0.0000   3830.6274 - 0.0000   3920.6932 - 0.0000
rtREV+F+R3       -1885.1968   3826.3935 - 0.0000   3834.0180 - 0.0000   3924.0838 - 0.0000
mtREV+F+G4       -1901.0232   3852.0463 - 0.0000   3858.0649 - 0.0000   3939.2698 - 0.0000
HIVb+F+G4        -1902.0345   3854.0690 - 0.0000   3860.0875 - 0.0000   3941.2924 - 0.0000
HIVb+F+I         -1903.5430   3857.0860 - 0.0000   3863.1045 - 0.0000   3944.3094 - 0.0000
mtREV+F+I+G4     -1900.9972   3853.9944 - 0.0000   3860.5246 - 0.0000   3944.7068 - 0.0000
mtREV+F+R2       -1901.4509   3854.9018 - 0.0000   3861.4321 - 0.0000   3945.6142 - 0.0000
HIVb+F+I+G4      -1901.4786   3854.9572 - 0.0000   3861.4874 - 0.0000   3945.6696 - 0.0000
mtInv+F+G4       -1904.2474   3858.4949 - 0.0000   3864.5134 - 0.0000   3945.7183 - 0.0000
mtREV+F+I        -1904.7982   3859.5963 - 0.0000   3865.6148 - 0.0000   3946.8198 - 0.0000
HIVb+F+R2        -1903.1194   3858.2387 - 0.0000   3864.7690 - 0.0000   3948.9511 - 0.0000
mtInv+F+R2       -1904.1325   3860.2650 - 0.0000   3866.7952 - 0.0000   3950.9774 - 0.0000
mtInv+F+I+G4     -1904.3400   3860.6800 - 0.0000   3867.2102 - 0.0000   3951.3924 - 0.0000
mtZOA+F+G4       -1907.3726   3864.7451 - 0.0000   3870.7637 - 0.0000   3951.9686 - 0.0000
mtInv+F+I        -1907.6243   3865.2485 - 0.0000   3871.2670 - 0.0000   3952.4720 - 0.0000
HIVb+G4          -1960.4593   3932.9185 - 0.0000   3933.2760 - 0.0000   3953.8522 - 0.0000
HIVb+I           -1960.6667   3933.3335 - 0.0000   3933.6909 - 0.0000   3954.2671 - 0.0000
HIVb+F+R3        -1900.6455   3857.2910 - 0.0000   3864.9154 - 0.0000   3954.9813 - 0.0000
mtREV+F+R3       -1900.9756   3857.9512 - 0.0000   3865.5756 - 0.0000   3955.6414 - 0.0000
mtZOA+F+I+G4     -1907.5573   3867.1146 - 0.0000   3873.6448 - 0.0000   3957.8270 - 0.0000
HIVb+I+G4        -1959.7616   3933.5232 - 0.0000   3934.0018 - 0.0000   3957.9458 - 0.0000
mtInv+F+R3       -1902.8749   3861.7497 - 0.0000   3869.3741 - 0.0000   3959.4400 - 0.0000
HIVb+F           -1913.8569   3875.7139 - 0.0000   3881.2438 - 0.0000   3959.4484 - 0.0000
mtZOA+F+R2       -1908.6710   3869.3420 - 0.0000   3875.8722 - 0.0000   3960.0543 - 0.0000
HIVb+R2          -1961.0109   3936.0219 - 0.0000   3936.5005 - 0.0000   3960.4444 - 0.0000
mtREV+F          -1915.0509   3878.1019 - 0.0000   3883.6318 - 0.0000   3961.8364 - 0.0000
mtInv+F          -1915.2082   3878.4165 - 0.0000   3883.9464 - 0.0000   3962.1510 - 0.0000
mtMet+F+G4       -1912.8268   3875.6536 - 0.0000   3881.6722 - 0.0000   3962.8771 - 0.0000
HIVb             -1968.7953   3947.5905 - 0.0000   3947.8447 - 0.0000   3965.0352 - 0.0000
mtZOA+F+R3       -1905.7545   3867.5090 - 0.0000   3875.1334 - 0.0000   3965.1993 - 0.0000
mtZOA+F+I        -1914.4753   3878.9506 - 0.0000   3884.9692 - 0.0000   3966.1741 - 0.0000
HIVb+R3          -1959.4533   3936.9065 - 0.0000   3937.6824 - 0.0000   3968.3070 - 0.0000
mtMet+F+R2       -1912.8962   3877.7924 - 0.0000   3884.3226 - 0.0000   3968.5047 - 0.0000
mtMet+F+I+G4     -1913.0747   3878.1495 - 0.0000   3884.6797 - 0.0000   3968.8618 - 0.0000
mtART+F+G4       -1918.9087   3887.8175 - 0.0000   3893.8360 - 0.0000   3975.0409 - 0.0000
mtMet+F+R3       -1910.9391   3877.8782 - 0.0000   3885.5026 - 0.0000   3975.5684 - 0.0000
mtMet+F+I        -1919.3312   3888.6625 - 0.0000   3894.6810 - 0.0000   3975.8859 - 0.0000
mtART+F+I+G4     -1919.3111   3890.6222 - 0.0000   3897.1524 - 0.0000   3981.3345 - 0.0000
mtART+F+R2       -1921.4257   3894.8513 - 0.0000   3901.3815 - 0.0000   3985.5637 - 0.0000
mtART+F+R3       -1916.2648   3888.5295 - 0.0000   3896.1539 - 0.0000   3986.2198 - 0.0000
mtZOA+F          -1929.5631   3907.1261 - 0.0000   3912.6561 - 0.0000   3990.8606 - 0.0000
mtMet+F          -1930.3547   3908.7095 - 0.0000   3914.2394 - 0.0000   3992.4440 - 0.0000
mtMAM+F+G4       -1928.0003   3906.0007 - 0.0000   3912.0192 - 0.0000   3993.2241 - 0.0000
HIVw+F+G4        -1928.1276   3906.2553 - 0.0000   3912.2738 - 0.0000   3993.4787 - 0.0000
mtVer+F+G4       -1930.2276   3910.4551 - 0.0000   3916.4736 - 0.0000   3997.6785 - 0.0000
HIVw+F+I         -1930.4369   3910.8738 - 0.0000   3916.8923 - 0.0000   3998.0973 - 0.0000
HIVw+F+I+G4      -1927.7560   3907.5119 - 0.0000   3914.0421 - 0.0000   3998.2243 - 0.0000
mtMAM+F+I+G4     -1928.5877   3909.1754 - 0.0000   3915.7056 - 0.0000   3999.8877 - 0.0000
mtMAM+F+R2       -1929.2496   3910.4992 - 0.0000   3917.0294 - 0.0000   4001.2115 - 0.0000
mtVer+F+R2       -1929.4827   3910.9654 - 0.0000   3917.4957 - 0.0000   4001.6778 - 0.0000
mtART+F+I        -1932.3029   3914.6057 - 0.0000   3920.6243 - 0.0000   4001.8292 - 0.0000
HIVw+F+R2        -1929.5950   3911.1899 - 0.0000   3917.7202 - 0.0000   4001.9023 - 0.0000
mtVer+F+I+G4     -1930.5372   3913.0744 - 0.0000   3919.6046 - 0.0000   4003.7867 - 0.0000
HIVw+F+R3        -1925.7895   3907.5790 - 0.0000   3915.2034 - 0.0000   4005.2693 - 0.0000
mtMAM+F+R3       -1925.8479   3907.6958 - 0.0000   3915.3202 - 0.0000   4005.3860 - 0.0000
mtVer+F+R3       -1927.5318   3911.0636 - 0.0000   3918.6880 - 0.0000   4008.7538 - 0.0000
HIVw+F           -1942.5384   3933.0768 - 0.0000   3938.6068 - 0.0000   4016.8113 - 0.0000
mtVer+F+I        -1942.0634   3934.1268 - 0.0000   3940.1453 - 0.0000   4021.3502 - 0.0000
mtMAM+F+I        -1946.2510   3942.5021 - 0.0000   3948.5206 - 0.0000   4029.7255 - 0.0000
mtART+F          -1953.0405   3954.0810 - 0.0000   3959.6109 - 0.0000   4037.8155 - 0.0000
mtVer+F          -1958.4765   3964.9529 - 0.0000   3970.4829 - 0.0000   4048.6875 - 0.0000
mtMAM+F          -1966.6935   3981.3871 - 0.0000   3986.9170 - 0.0000   4065.1216 - 0.0000
HIVw+G4          -2017.1353   4046.2707 - 0.0000   4046.6281 - 0.0000   4067.2043 - 0.0000
HIVw+I           -2018.6150   4049.2300 - 0.0000   4049.5875 - 0.0000   4070.1637 - 0.0000
HIVw+I+G4        -2016.5513   4047.1025 - 0.0000   4047.5812 - 0.0000   4071.5251 - 0.0000
mtREV+G4         -2020.6752   4053.3504 - 0.0000   4053.7078 - 0.0000   4074.2840 - 0.0000
HIVw+R2          -2018.3002   4050.6005 - 0.0000   4051.0791 - 0.0000   4075.0230 - 0.0000
HIVw+R3          -2015.1915   4048.3829 - 0.0000   4049.1588 - 0.0000   4079.7834 - 0.0000
mtREV+I+G4       -2020.8339   4055.6679 - 0.0000   4056.1465 - 0.0000   4080.0904 - 0.0000
mtZOA+G4         -2023.9732   4059.9464 - 0.0000   4060.3038 - 0.0000   4080.8800 - 0.0000
mtREV+R2         -2021.3283   4056.6566 - 0.0000   4057.1352 - 0.0000   4081.0791 - 0.0000
mtREV+I          -2025.0860   4062.1720 - 0.0000   4062.5295 - 0.0000   4083.1056 - 0.0000
mtZOA+I+G4       -2024.0365   4062.0730 - 0.0000   4062.5516 - 0.0000   4086.4955 - 0.0000
mtZOA+R2         -2025.1409   4064.2818 - 0.0000   4064.7605 - 0.0000   4088.7044 - 0.0000
mtREV+R3         -2020.5694   4059.1389 - 0.0000   4059.9148 - 0.0000   4090.5393 - 0.0000
HIVw             -2031.5555   4073.1111 - 0.0000   4073.3653 - 0.0000   4090.5557 - 0.0000
mtZOA+I          -2031.3093   4074.6185 - 0.0000   4074.9760 - 0.0000   4095.5522 - 0.0000
mtZOA+R3         -2023.4279   4064.8557 - 0.0000   4065.6316 - 0.0000   4096.2562 - 0.0000
mtREV            -2034.6856   4079.3713 - 0.0000   4079.6255 - 0.0000   4096.8160 - 0.0000
mtMet+G4         -2039.2072   4090.4143 - 0.0000   4090.7718 - 0.0000   4111.3480 - 0.0000
mtMet+I+G4       -2039.5158   4093.0316 - 0.0000   4093.5102 - 0.0000   4117.4541 - 0.0000
mtMet+R2         -2040.2032   4094.4065 - 0.0000   4094.8851 - 0.0000   4118.8290 - 0.0000
mtVer+G4         -2043.5095   4099.0190 - 0.0000   4099.3764 - 0.0000   4119.9526 - 0.0000
mtMet+I          -2045.9374   4103.8748 - 0.0000   4104.2323 - 0.0000   4124.8085 - 0.0000
mtVer+R2         -2043.6284   4101.2568 - 0.0000   4101.7355 - 0.0000   4125.6794 - 0.0000
mtZOA            -2049.2026   4108.4052 - 0.0000   4108.6595 - 0.0000   4125.8499 - 0.0000
mtVer+I+G4       -2043.9632   4101.9264 - 0.0000   4102.4050 - 0.0000   4126.3490 - 0.0000
mtMet+R3         -2038.7725   4095.5451 - 0.0000   4096.3209 - 0.0000   4126.9455 - 0.0000
mtVer+R3         -2042.4819   4102.9638 - 0.0000   4103.7397 - 0.0000   4134.3643 - 0.0000
mtMet            -2057.3048   4124.6096 - 0.0000   4124.8638 - 0.0000   4142.0543 - 0.0000
mtMAM+G4         -2055.0860   4122.1721 - 0.0000   4122.5295 - 0.0000   4143.1057 - 0.0000
mtVer+I          -2058.1296   4128.2591 - 0.0000   4128.6166 - 0.0000   4149.1928 - 0.0000
mtMAM+I+G4       -2055.7333   4125.4666 - 0.0000   4125.9453 - 0.0000   4149.8892 - 0.0000
mtART+G4         -2058.7295   4129.4590 - 0.0000   4129.8165 - 0.0000   4150.3927 - 0.0000
mtMAM+R2         -2057.2170   4128.4340 - 0.0000   4128.9126 - 0.0000   4152.8566 - 0.0000
mtART+I+G4       -2058.6507   4131.3014 - 0.0000   4131.7801 - 0.0000   4155.7240 - 0.0000
mtART+R2         -2059.9832   4133.9663 - 0.0000   4134.4449 - 0.0000   4158.3889 - 0.0000
mtMAM+R3         -2054.9364   4127.8728 - 0.0000   4128.6487 - 0.0000   4159.2732 - 0.0000
mtART+R3         -2058.0318   4134.0637 - 0.0000   4134.8395 - 0.0000   4165.4641 - 0.0000
mtInv+G4         -2067.0045   4146.0091 - 0.0000   4146.3665 - 0.0000   4166.9427 - 0.0000
mtART+I          -2068.8482   4149.6965 - 0.0000   4150.0539 - 0.0000   4170.6301 - 0.0000
mtInv+I+G4       -2066.9939   4147.9877 - 0.0000   4148.4663 - 0.0000   4172.4103 - 0.0000
mtInv+I          -2069.9712   4151.9424 - 0.0000   4152.2998 - 0.0000   4172.8760 - 0.0000
mtInv+R2         -2067.6933   4149.3866 - 0.0000   4149.8652 - 0.0000   4173.8092 - 0.0000
mtVer            -2074.4112   4158.8223 - 0.0000   4159.0766 - 0.0000   4176.2670 - 0.0000
mtInv+R3         -2066.7944   4151.5888 - 0.0000   4152.3646 - 0.0000   4182.9892 - 0.0000
mtMAM+I          -2075.5750   4163.1499 - 0.0000   4163.5074 - 0.0000   4184.0836 - 0.0000
mtInv            -2078.4332   4166.8665 - 0.0000   4167.1207 - 0.0000   4184.3112 - 0.0000
mtART            -2096.1599   4202.3199 - 0.0000   4202.5741 - 0.0000   4219.7646 - 0.0000
mtMAM            -2100.0009   4210.0018 - 0.0000   4210.2560 - 0.0000   4227.4465 - 0.0000

AIC, w-AIC   : Akaike information criterion scores and weights.
AICc, w-AICc : Corrected AIC scores and weights.
BIC, w-BIC   : Bayesian information criterion scores and weights.

Plus signs denote the 95% confidence sets.
Minus signs denote significant exclusion.

SUBSTITUTION PROCESS
--------------------

Model of substitution: WAG

State frequencies: (model)

Model of rate heterogeneity: Uniform

MAXIMUM LIKELIHOOD TREE
-----------------------

Log-likelihood of the tree: -1889.1243 (s.e. 43.0816)
Unconstrained log-likelihood (without tree): -1228.7131
Number of free parameters (#branches + #model parameters): 5
Akaike information criterion (AIC) score: 3788.2486
Corrected Akaike information criterion (AICc) score: 3788.5028
Bayesian information criterion (BIC) score: 3805.6933

Total tree length (sum of branch lengths): 1.6536
Sum of internal branch lengths: 0.5114 (30.9252% of tree length)

NOTE: Tree is UNROOTED although outgroup taxon 'PYAP_22273' is drawn at root

+-------PYAP_22273
|
+---------PYAR_24096
|
|                          +-------------------------------PYIW_18788
+--------------------------|
                           +---------PYU1_G001739

Tree in newick format:

(PYAP_22273:0.1518997677,PYAR_24096:0.1921745823,(PYIW_18788:0.6101876953,PYU1_G001739:0.1879668179):0.5113831442);

TIME STAMP
----------

Date and time: Wed Dec  8 06:09:58 2021
Total CPU time used: 0.31962 seconds (0h:0m:0s)
Total wall-clock time used: 0.162174 seconds (0h:0m:0s)