Newick Format
(HYAP_01511:0.8658817146,(PYAR_14487:0.0906388283,PHYKE_6984:0.0044799299):0.0114900583,((PHYRA_72415:0.0262075026,PHYCA_532912:0.0300611433):0.0100384393,PHYSO_480010:0.0132825175):0.0000020914);

Protein sequences → MUSCLE → trimAl (automated1) → IQ-TREE (Automatic model selection using ModelFinder)

Root the phylogeny or hide taxa by clicking on nodes

Phylogeny (unrooted) rendered using phylotree.js

Reconstruct this phylogeny using PHYLIP Neighbor, FastTree, IQ-TREE (+ ModelFinder) or PhyML?


IQ-TREE Log
IQ-TREE 1.6.11 built Jun  6 2019

Input file name: seq.aln-trimal
Type of analysis: ModelFinder + tree reconstruction
Random seed number: 16494

REFERENCES
----------

To cite ModelFinder please use: 

Subha Kalyaanamoorthy, Bui Quang Minh, Thomas KF Wong, Arndt von Haeseler,
and Lars S Jermiin (2017) ModelFinder: Fast model selection for
accurate phylogenetic estimates. Nature Methods, 14:587–589.
https://doi.org/10.1038/nmeth.4285

To cite IQ-TREE please use:

Lam-Tung Nguyen, Heiko A. Schmidt, Arndt von Haeseler, and Bui Quang Minh
(2015) IQ-TREE: A fast and effective stochastic algorithm for estimating
maximum likelihood phylogenies. Mol Biol Evol, 32:268-274.
https://doi.org/10.1093/molbev/msu300

SEQUENCE ALIGNMENT
------------------

Input data: 6 sequences with 652 amino-acid sites
Number of constant sites: 497 (= 76.227% of all sites)
Number of invariant (constant or ambiguous constant) sites: 497 (= 76.227% of all sites)
Number of parsimony informative sites: 15
Number of distinct site patterns: 254

ModelFinder
-----------

Best-fit model according to BIC: LG+I

List of models sorted by BIC scores: 

Model             LogL          AIC      w-AIC      AICc     w-AICc       BIC      w-BIC
LG+I             -2844.5349   5709.0699 + 0.2146   5709.4131 + 0.3920   5753.8703 + 0.7627
LG+G4            -2845.9053   5711.8106 + 0.0545   5712.1538 + 0.0996   5756.6110 + 0.1938
LG+I+G4          -2844.5477   5711.0955 + 0.0779   5711.5080 + 0.1375   5760.3760 - 0.0295
LG+R2            -2845.7728   5713.5456 - 0.0229   5713.9581 - 0.0404   5762.8261 - 0.0087
LG               -2852.9096   5723.8193 - 0.0001   5724.0997 - 0.0003   5764.1397 - 0.0045
WAG+I            -2851.9618   5723.9236 - 0.0001   5724.2668 - 0.0002   5768.7240 - 0.0005
WAG+G4           -2852.9016   5725.8033 - 0.0000   5726.1465 - 0.0001   5770.6037 - 0.0002
VT+I             -2853.5495   5727.0990 - 0.0000   5727.4422 - 0.0000   5771.8994 - 0.0001
VT+G4            -2854.4987   5728.9974 - 0.0000   5729.3406 - 0.0000   5773.7978 - 0.0000
VT               -2857.8270   5733.6540 - 0.0000   5733.9344 - 0.0000   5773.9744 - 0.0000
WAG              -2858.2244   5734.4488 - 0.0000   5734.7292 - 0.0000   5774.7692 - 0.0000
WAG+I+G4         -2852.0311   5726.0622 - 0.0000   5726.4747 - 0.0001   5775.3427 - 0.0000
LG+R3            -2845.7366   5717.4732 - 0.0032   5718.0437 - 0.0052   5775.7137 - 0.0000
WAG+R2           -2852.5222   5727.0444 - 0.0000   5727.4569 - 0.0000   5776.3249 - 0.0000
JTT+I            -2856.6077   5733.2154 - 0.0000   5733.5586 - 0.0000   5778.0158 - 0.0000
VT+I+G4          -2853.6782   5729.3564 - 0.0000   5729.7689 - 0.0000   5778.6369 - 0.0000
JTTDCMut+I       -2857.0454   5734.0908 - 0.0000   5734.4340 - 0.0000   5778.8912 - 0.0000
VT+R2            -2854.3375   5730.6750 - 0.0000   5731.0875 - 0.0000   5779.9555 - 0.0000
JTT+G4           -2857.6061   5735.2122 - 0.0000   5735.5554 - 0.0000   5780.0127 - 0.0000
JTTDCMut+G4      -2858.0227   5736.0455 - 0.0000   5736.3887 - 0.0000   5780.8459 - 0.0000
JTT              -2863.1331   5744.2662 - 0.0000   5744.5466 - 0.0000   5784.5866 - 0.0000
JTT+I+G4         -2856.6762   5735.3524 - 0.0000   5735.7649 - 0.0000   5784.6329 - 0.0000
JTTDCMut+I+G4    -2857.0996   5736.1991 - 0.0000   5736.6116 - 0.0000   5785.4796 - 0.0000
JTTDCMut         -2863.6204   5745.2408 - 0.0000   5745.5212 - 0.0000   5785.5612 - 0.0000
JTT+R2           -2857.2184   5736.4368 - 0.0000   5736.8493 - 0.0000   5785.7173 - 0.0000
JTTDCMut+R2      -2858.4894   5738.9788 - 0.0000   5739.3913 - 0.0000   5788.2593 - 0.0000
WAG+R3           -2852.5021   5731.0042 - 0.0000   5731.5747 - 0.0000   5789.2448 - 0.0000
VT+R3            -2854.3147   5734.6295 - 0.0000   5735.2000 - 0.0000   5792.8701 - 0.0000
Blosum62+I       -2865.4333   5750.8666 - 0.0000   5751.2098 - 0.0000   5795.6670 - 0.0000
Blosum62+G4      -2866.5301   5753.0602 - 0.0000   5753.4034 - 0.0000   5797.8606 - 0.0000
JTT+R3           -2857.2004   5740.4008 - 0.0000   5740.9714 - 0.0000   5798.6414 - 0.0000
Blosum62         -2870.1992   5758.3985 - 0.0000   5758.6788 - 0.0000   5798.7189 - 0.0000
JTTDCMut+R3      -2858.4549   5742.9097 - 0.0000   5743.4802 - 0.0000   5801.1503 - 0.0000
Blosum62+I+G4    -2865.4460   5752.8921 - 0.0000   5753.3046 - 0.0000   5802.1726 - 0.0000
Blosum62+R2      -2866.7001   5755.4002 - 0.0000   5755.8127 - 0.0000   5804.6807 - 0.0000
rtREV+I          -2870.4957   5760.9915 - 0.0000   5761.3347 - 0.0000   5805.7919 - 0.0000
rtREV+G4         -2871.7391   5763.4782 - 0.0000   5763.8214 - 0.0000   5808.2786 - 0.0000
rtREV+I+G4       -2870.5003   5763.0005 - 0.0000   5763.4130 - 0.0000   5812.2810 - 0.0000
PMB+I            -2874.1391   5768.2781 - 0.0000   5768.6214 - 0.0000   5813.0786 - 0.0000
rtREV+R2         -2871.0996   5764.1993 - 0.0000   5764.6118 - 0.0000   5813.4798 - 0.0000
PMB+G4           -2875.0368   5770.0737 - 0.0000   5770.4169 - 0.0000   5814.8741 - 0.0000
PMB              -2879.0134   5776.0268 - 0.0000   5776.3072 - 0.0000   5816.3472 - 0.0000
Blosum62+R3      -2866.6834   5759.3669 - 0.0000   5759.9374 - 0.0000   5817.6075 - 0.0000
rtREV            -2880.1564   5778.3128 - 0.0000   5778.5932 - 0.0000   5818.6332 - 0.0000
PMB+I+G4         -2874.1627   5770.3255 - 0.0000   5770.7380 - 0.0000   5819.6060 - 0.0000
PMB+R2           -2874.9177   5771.8355 - 0.0000   5772.2480 - 0.0000   5821.1160 - 0.0000
Dayhoff+I        -2878.8565   5777.7130 - 0.0000   5778.0562 - 0.0000   5822.5135 - 0.0000
DCMut+I          -2878.9362   5777.8725 - 0.0000   5778.2157 - 0.0000   5822.6729 - 0.0000
Dayhoff+G4       -2878.9531   5777.9062 - 0.0000   5778.2494 - 0.0000   5822.7066 - 0.0000
DCMut+G4         -2879.0402   5778.0805 - 0.0000   5778.4237 - 0.0000   5822.8809 - 0.0000
cpREV+I          -2880.7416   5781.4832 - 0.0000   5781.8265 - 0.0000   5826.2837 - 0.0000
rtREV+R3         -2871.0607   5768.1214 - 0.0000   5768.6919 - 0.0000   5826.3619 - 0.0000
cpREV+G4         -2882.0163   5784.0326 - 0.0000   5784.3759 - 0.0000   5828.8331 - 0.0000
DCMut+I+G4       -2878.7791   5779.5581 - 0.0000   5779.9706 - 0.0000   5828.8386 - 0.0000
Dayhoff+I+G4     -2878.8065   5779.6129 - 0.0000   5780.0254 - 0.0000   5828.8934 - 0.0000
DCMut+R2         -2879.3386   5780.6772 - 0.0000   5781.0897 - 0.0000   5829.9577 - 0.0000
Dayhoff+R2       -2879.6041   5781.2082 - 0.0000   5781.6207 - 0.0000   5830.4887 - 0.0000
cpREV+I+G4       -2880.7471   5783.4941 - 0.0000   5783.9066 - 0.0000   5832.7746 - 0.0000
PMB+R3           -2874.8814   5775.7627 - 0.0000   5776.3333 - 0.0000   5834.0033 - 0.0000
cpREV+R2         -2881.4112   5784.8224 - 0.0000   5785.2349 - 0.0000   5834.1029 - 0.0000
Dayhoff          -2889.3406   5796.6811 - 0.0000   5796.9615 - 0.0000   5837.0015 - 0.0000
DCMut            -2889.3563   5796.7126 - 0.0000   5796.9930 - 0.0000   5837.0330 - 0.0000
rtREV+F+I        -2825.2167   5708.4333 + 0.2950   5711.2307 + 0.1580   5838.3546 - 0.0000
cpREV            -2890.2501   5798.5002 - 0.0000   5798.7806 - 0.0000   5838.8206 - 0.0000
rtREV+F+G4       -2826.2259   5710.4518 + 0.1075   5713.2493 + 0.0576   5840.3731 - 0.0000
DCMut+R3         -2879.2288   5784.4577 - 0.0000   5785.0282 - 0.0000   5842.6982 - 0.0000
Dayhoff+R3       -2879.2731   5784.5463 - 0.0000   5785.1168 - 0.0000   5842.7869 - 0.0000
LG+F+I           -2828.0814   5714.1628 - 0.0168   5716.9602 - 0.0090   5844.0841 - 0.0000
rtREV+F+I+G4     -2825.2206   5710.4412 + 0.1081   5713.4363 + 0.0524   5844.8425 - 0.0000
rtREV+F+R2       -2825.5976   5711.1952 + 0.0741   5714.1903 - 0.0360   5845.5965 - 0.0000
LG+F+G4          -2829.1691   5716.3382 - 0.0057   5719.1356 - 0.0030   5846.2595 - 0.0000
cpREV+R3         -2881.3350   5788.6699 - 0.0000   5789.2405 - 0.0000   5846.9105 - 0.0000
rtREV+F          -2834.4007   5724.8014 - 0.0001   5727.4081 - 0.0000   5850.2426 - 0.0000
LG+F+I+G4        -2828.0844   5716.1687 - 0.0062   5719.1639 - 0.0030   5850.5701 - 0.0000
LG+F+R2          -2829.0264   5718.0529 - 0.0024   5721.0480 - 0.0012   5852.4542 - 0.0000
LG+F             -2835.9551   5727.9101 - 0.0000   5730.5169 - 0.0000   5853.3514 - 0.0000
rtREV+F+R3       -2825.5732   5715.1465 - 0.0103   5718.5584 - 0.0040   5858.5079 - 0.0000
LG+F+R3          -2828.9946   5721.9891 - 0.0003   5725.4011 - 0.0001   5865.3506 - 0.0000
VT+F+I           -2841.2469   5740.4938 - 0.0000   5743.2912 - 0.0000   5870.4151 - 0.0000
VT+F+G4          -2842.1235   5742.2469 - 0.0000   5745.0443 - 0.0000   5872.1682 - 0.0000
VT+F             -2845.5372   5747.0744 - 0.0000   5749.6811 - 0.0000   5872.5157 - 0.0000
WAG+F+I          -2842.6033   5743.2066 - 0.0000   5746.0040 - 0.0000   5873.1279 - 0.0000
WAG+F+G4         -2843.6267   5745.2533 - 0.0000   5748.0508 - 0.0000   5875.1746 - 0.0000
Blosum62+F+I     -2843.6561   5745.3123 - 0.0000   5748.1097 - 0.0000   5875.2336 - 0.0000
VT+F+I+G4        -2841.3564   5742.7128 - 0.0000   5745.7080 - 0.0000   5877.1141 - 0.0000
Blosum62+F+G4    -2844.6429   5747.2859 - 0.0000   5750.0833 - 0.0000   5877.2072 - 0.0000
Blosum62+F       -2848.3374   5752.6747 - 0.0000   5755.2815 - 0.0000   5878.1160 - 0.0000
VT+F+R2          -2841.9466   5743.8932 - 0.0000   5746.8884 - 0.0000   5878.2946 - 0.0000
WAG+F+I+G4       -2842.6318   5745.2637 - 0.0000   5748.2588 - 0.0000   5879.6650 - 0.0000
WAG+F            -2849.4382   5754.8763 - 0.0000   5757.4831 - 0.0000   5880.3176 - 0.0000
WAG+F+R2         -2843.1718   5746.3437 - 0.0000   5749.3389 - 0.0000   5880.7450 - 0.0000
mtInv+F+I        -2846.4265   5750.8530 - 0.0000   5753.6504 - 0.0000   5880.7743 - 0.0000
Blosum62+F+I+G4  -2843.6685   5747.3369 - 0.0000   5750.3321 - 0.0000   5881.7383 - 0.0000
JTT+F+I          -2846.9881   5751.9761 - 0.0000   5754.7735 - 0.0000   5881.8974 - 0.0000
mtZOA+F+G4       -2847.2179   5752.4359 - 0.0000   5755.2333 - 0.0000   5882.3572 - 0.0000
mtInv+F+G4       -2847.2671   5752.5342 - 0.0000   5755.3316 - 0.0000   5882.4555 - 0.0000
JTTDCMut+F+I     -2847.5068   5753.0136 - 0.0000   5755.8110 - 0.0000   5882.9349 - 0.0000
JTT+F+G4         -2847.9593   5753.9187 - 0.0000   5756.7161 - 0.0000   5883.8400 - 0.0000
Blosum62+F+R2    -2844.7793   5749.5585 - 0.0000   5752.5537 - 0.0000   5883.9599 - 0.0000
mtZOA+F+I        -2848.2816   5754.5631 - 0.0000   5757.3606 - 0.0000   5884.4844 - 0.0000
JTTDCMut+F+G4    -2848.4724   5754.9448 - 0.0000   5757.7423 - 0.0000   5884.8661 - 0.0000
PMB+F+I          -2849.5176   5757.0351 - 0.0000   5759.8326 - 0.0000   5886.9564 - 0.0000
mtInv+F+I+G4     -2846.4361   5752.8722 - 0.0000   5755.8673 - 0.0000   5887.2735 - 0.0000
mtZOA+F+I+G4     -2846.8730   5753.7461 - 0.0000   5756.7413 - 0.0000   5888.1474 - 0.0000
mtZOA+F+R2       -2847.0008   5754.0017 - 0.0000   5756.9969 - 0.0000   5888.4030 - 0.0000
mtInv+F+R2       -2847.0153   5754.0306 - 0.0000   5757.0258 - 0.0000   5888.4320 - 0.0000
JTT+F+I+G4       -2847.0269   5754.0537 - 0.0000   5757.0489 - 0.0000   5888.4551 - 0.0000
PMB+F+G4         -2850.3846   5758.7692 - 0.0000   5761.5666 - 0.0000   5888.6905 - 0.0000
JTT+F            -2853.8657   5763.7314 - 0.0000   5766.3382 - 0.0000   5889.1727 - 0.0000
JTT+F+R2         -2847.5400   5755.0800 - 0.0000   5758.0752 - 0.0000   5889.4813 - 0.0000
JTTDCMut+F+I+G4  -2847.5755   5755.1511 - 0.0000   5758.1462 - 0.0000   5889.5524 - 0.0000
JTTDCMut+F       -2854.4950   5764.9901 - 0.0000   5767.5968 - 0.0000   5890.4313 - 0.0000
PMB+F            -2854.6261   5765.2523 - 0.0000   5767.8590 - 0.0000   5890.6935 - 0.0000
VT+F+R3          -2841.9314   5747.8627 - 0.0000   5751.2747 - 0.0000   5891.2242 - 0.0000
JTTDCMut+F+R2    -2848.9318   5757.8636 - 0.0000   5760.8588 - 0.0000   5892.2650 - 0.0000
cpREV+F+I        -2852.4267   5762.8534 - 0.0000   5765.6508 - 0.0000   5892.7747 - 0.0000
PMB+F+I+G4       -2849.5255   5759.0510 - 0.0000   5762.0461 - 0.0000   5893.4523 - 0.0000
WAG+F+R3         -2843.1622   5750.3244 - 0.0000   5753.7364 - 0.0000   5893.6858 - 0.0000
PMB+F+R2         -2850.2241   5760.4481 - 0.0000   5763.4433 - 0.0000   5894.8494 - 0.0000
cpREV+F+G4       -2853.5334   5765.0668 - 0.0000   5767.8642 - 0.0000   5894.9881 - 0.0000
mtREV+F+I        -2853.6281   5765.2561 - 0.0000   5768.0536 - 0.0000   5895.1774 - 0.0000
mtREV+F+G4       -2853.9491   5765.8982 - 0.0000   5768.6956 - 0.0000   5895.8195 - 0.0000
Blosum62+F+R3    -2844.7628   5753.5256 - 0.0000   5756.9375 - 0.0000   5896.8870 - 0.0000
mtInv+F          -2858.6690   5773.3379 - 0.0000   5775.9446 - 0.0000   5898.7792 - 0.0000
cpREV+F+I+G4     -2852.4339   5764.8677 - 0.0000   5767.8629 - 0.0000   5899.2691 - 0.0000
cpREV+F+R2       -2852.9276   5765.8551 - 0.0000   5768.8503 - 0.0000   5900.2565 - 0.0000
mtREV+F+R2       -2853.2013   5766.4027 - 0.0000   5769.3979 - 0.0000   5900.8040 - 0.0000
mtREV+F+I+G4     -2853.2738   5766.5475 - 0.0000   5769.5427 - 0.0000   5900.9489 - 0.0000
mtInv+F+R3       -2846.9610   5757.9221 - 0.0000   5761.3340 - 0.0000   5901.2835 - 0.0000
mtZOA+F+R3       -2846.9912   5757.9824 - 0.0000   5761.3943 - 0.0000   5901.3438 - 0.0000
JTT+F+R3         -2847.5313   5759.0627 - 0.0000   5762.4746 - 0.0000   5902.4241 - 0.0000
Dayhoff+F+I      -2858.4535   5774.9069 - 0.0000   5777.7044 - 0.0000   5904.8282 - 0.0000
DCMut+F+I        -2858.4982   5774.9964 - 0.0000   5777.7938 - 0.0000   5904.9176 - 0.0000
Dayhoff+F+G4     -2858.6036   5775.2073 - 0.0000   5778.0047 - 0.0000   5905.1285 - 0.0000
JTTDCMut+F+R3    -2848.9066   5761.8133 - 0.0000   5765.2252 - 0.0000   5905.1747 - 0.0000
DCMut+F+G4       -2858.6533   5775.3066 - 0.0000   5778.1040 - 0.0000   5905.2278 - 0.0000
cpREV+F          -2862.6267   5781.2534 - 0.0000   5783.8602 - 0.0000   5906.6947 - 0.0000
PMB+F+R3         -2850.2066   5764.4133 - 0.0000   5767.8252 - 0.0000   5907.7747 - 0.0000
mtART+F+G4       -2860.2147   5778.4294 - 0.0000   5781.2268 - 0.0000   5908.3507 - 0.0000
FLU+I            -2922.7215   5865.4430 - 0.0000   5865.7862 - 0.0000   5910.2434 - 0.0000
DCMut+F+I+G4     -2858.3223   5776.6446 - 0.0000   5779.6398 - 0.0000   5911.0459 - 0.0000
Dayhoff+F+I+G4   -2858.3384   5776.6769 - 0.0000   5779.6720 - 0.0000   5911.0782 - 0.0000
mtMet+F+I        -2862.0437   5782.0873 - 0.0000   5784.8847 - 0.0000   5912.0086 - 0.0000
Dayhoff+F+R2     -2858.9485   5777.8969 - 0.0000   5780.8921 - 0.0000   5912.2983 - 0.0000
DCMut+F+R2       -2859.0262   5778.0525 - 0.0000   5781.0476 - 0.0000   5912.4538 - 0.0000
FLU+G4           -2924.0013   5868.0026 - 0.0000   5868.3459 - 0.0000   5912.8031 - 0.0000
cpREV+F+R3       -2852.8592   5769.7184 - 0.0000   5773.1304 - 0.0000   5913.0798 - 0.0000
mtMet+F+G4       -2862.8184   5783.6369 - 0.0000   5786.4343 - 0.0000   5913.5581 - 0.0000
mtREV+F+R3       -2853.1922   5770.3844 - 0.0000   5773.7964 - 0.0000   5913.7459 - 0.0000
mtART+F+I+G4     -2860.0796   5780.1592 - 0.0000   5783.1544 - 0.0000   5914.5605 - 0.0000
mtART+F+R2       -2860.6748   5781.3496 - 0.0000   5784.3448 - 0.0000   5915.7509 - 0.0000
mtART+F+I        -2864.3434   5786.6868 - 0.0000   5789.4843 - 0.0000   5916.6081 - 0.0000
FLU+I+G4         -2922.9643   5867.9286 - 0.0000   5868.3411 - 0.0000   5917.2091 - 0.0000
mtMet+F+I+G4     -2861.9232   5783.8465 - 0.0000   5786.8416 - 0.0000   5918.2478 - 0.0000
mtZOA+F          -2869.9391   5795.8782 - 0.0000   5798.4849 - 0.0000   5921.3194 - 0.0000
DCMut+F          -2870.1263   5796.2527 - 0.0000   5798.8594 - 0.0000   5921.6939 - 0.0000
Dayhoff+F        -2870.1574   5796.3148 - 0.0000   5798.9215 - 0.0000   5921.7560 - 0.0000
mtMet+F+R2       -2864.1234   5788.2468 - 0.0000   5791.2420 - 0.0000   5922.6482 - 0.0000
FLU+R2           -2926.6593   5875.3187 - 0.0000   5875.7312 - 0.0000   5924.5992 - 0.0000
mtREV+F          -2871.7962   5799.5924 - 0.0000   5802.1991 - 0.0000   5925.0336 - 0.0000
Dayhoff+F+R3     -2858.8598   5781.7197 - 0.0000   5785.1316 - 0.0000   5925.0811 - 0.0000
DCMut+F+R3       -2858.9844   5781.9688 - 0.0000   5785.3807 - 0.0000   5925.3302 - 0.0000
mtART+F+R3       -2860.6630   5785.3261 - 0.0000   5788.7380 - 0.0000   5928.6875 - 0.0000
mtMet+F+R3       -2864.0534   5792.1068 - 0.0000   5795.5188 - 0.0000   5935.4682 - 0.0000
mtVer+F+G4       -2874.2040   5806.4081 - 0.0000   5809.2055 - 0.0000   5936.3294 - 0.0000
mtVer+F+I        -2874.6205   5807.2409 - 0.0000   5810.0383 - 0.0000   5937.1622 - 0.0000
FLU+R3           -2926.6418   5879.2836 - 0.0000   5879.8541 - 0.0000   5937.5241 - 0.0000
mtMet+F          -2879.0983   5814.1966 - 0.0000   5816.8033 - 0.0000   5939.6378 - 0.0000
mtVer+F+I+G4     -2873.6146   5807.2291 - 0.0000   5810.2243 - 0.0000   5941.6305 - 0.0000
FLU              -2941.9246   5901.8492 - 0.0000   5902.1296 - 0.0000   5942.1696 - 0.0000
HIVb+G4          -2939.3523   5898.7046 - 0.0000   5899.0478 - 0.0000   5943.5050 - 0.0000
mtVer+F+R2       -2874.6259   5809.2518 - 0.0000   5812.2470 - 0.0000   5943.6532 - 0.0000
HIVb+I           -2939.9233   5899.8467 - 0.0000   5900.1899 - 0.0000   5944.6471 - 0.0000
mtMAM+F+G4       -2879.9817   5817.9635 - 0.0000   5820.7609 - 0.0000   5947.8848 - 0.0000
HIVb+I+G4        -2938.9317   5899.8634 - 0.0000   5900.2759 - 0.0000   5949.1438 - 0.0000
HIVb+R2          -2940.8243   5903.6487 - 0.0000   5904.0612 - 0.0000   5952.9292 - 0.0000
mtMAM+F+I        -2882.5843   5823.1686 - 0.0000   5825.9660 - 0.0000   5953.0899 - 0.0000
mtMAM+F+I+G4     -2879.3787   5818.7575 - 0.0000   5821.7527 - 0.0000   5953.1588 - 0.0000
mtMAM+F+R2       -2879.8875   5819.7750 - 0.0000   5822.7701 - 0.0000   5954.1763 - 0.0000
mtVer+F+R3       -2874.4974   5812.9947 - 0.0000   5816.4067 - 0.0000   5956.3561 - 0.0000
HIVb+R3          -2940.7158   5907.4316 - 0.0000   5908.0021 - 0.0000   5965.6721 - 0.0000
mtMAM+F+R3       -2879.8863   5823.7726 - 0.0000   5827.1845 - 0.0000   5967.1340 - 0.0000
mtVer+F          -2895.4068   5846.8135 - 0.0000   5849.4202 - 0.0000   5972.2548 - 0.0000
mtART+F          -2898.7243   5853.4486 - 0.0000   5856.0553 - 0.0000   5978.8898 - 0.0000
FLU+F+I          -2895.6664   5849.3329 - 0.0000   5852.1303 - 0.0000   5979.2542 - 0.0000
FLU+F+G4         -2895.8263   5849.6525 - 0.0000   5852.4500 - 0.0000   5979.5738 - 0.0000
HIVb             -2961.2217   5940.4434 - 0.0000   5940.7237 - 0.0000   5980.7638 - 0.0000
FLU+F+I+G4       -2895.1277   5850.2554 - 0.0000   5853.2506 - 0.0000   5984.6567 - 0.0000
FLU+F+R2         -2898.3431   5856.6862 - 0.0000   5859.6814 - 0.0000   5991.0875 - 0.0000
HIVb+F+G4        -2902.3307   5862.6613 - 0.0000   5865.4588 - 0.0000   5992.5826 - 0.0000
HIVb+F+I         -2904.0719   5866.1437 - 0.0000   5868.9412 - 0.0000   5996.0650 - 0.0000
HIVb+F+I+G4      -2902.0545   5864.1090 - 0.0000   5867.1042 - 0.0000   5998.5103 - 0.0000
HIVb+F+R2        -2903.4373   5866.8746 - 0.0000   5869.8698 - 0.0000   6001.2760 - 0.0000
FLU+F+R3         -2898.2821   5860.5643 - 0.0000   5863.9762 - 0.0000   6003.9257 - 0.0000
FLU+F            -2915.9352   5887.8703 - 0.0000   5890.4771 - 0.0000   6013.3116 - 0.0000
mtMAM+F          -2916.0546   5888.1092 - 0.0000   5890.7159 - 0.0000   6013.5504 - 0.0000
HIVb+F+R3        -2903.3095   5870.6190 - 0.0000   5874.0309 - 0.0000   6013.9804 - 0.0000
HIVb+F           -2926.1548   5908.3095 - 0.0000   5910.9163 - 0.0000   6033.7508 - 0.0000
HIVw+F+G4        -2934.2685   5926.5370 - 0.0000   5929.3345 - 0.0000   6056.4583 - 0.0000
HIVw+F+I+G4      -2933.0257   5926.0513 - 0.0000   5929.0465 - 0.0000   6060.4527 - 0.0000
HIVw+G4          -2998.2721   6016.5443 - 0.0000   6016.8875 - 0.0000   6061.3447 - 0.0000
HIVw+I+G4        -2997.3364   6016.6728 - 0.0000   6017.0853 - 0.0000   6065.9533 - 0.0000
HIVw+I           -3005.0567   6030.1134 - 0.0000   6030.4566 - 0.0000   6074.9138 - 0.0000
HIVw+F+R2        -2941.8281   5943.6562 - 0.0000   5946.6513 - 0.0000   6078.0575 - 0.0000
HIVw+F+I         -2945.1663   5948.3326 - 0.0000   5951.1300 - 0.0000   6078.2538 - 0.0000
HIVw+R2          -3004.0715   6030.1431 - 0.0000   6030.5556 - 0.0000   6079.4236 - 0.0000
HIVw+F+R3        -2941.7431   5947.4862 - 0.0000   5950.8981 - 0.0000   6090.8476 - 0.0000
HIVw+R3          -3004.0331   6034.0662 - 0.0000   6034.6368 - 0.0000   6092.3068 - 0.0000
mtZOA+G4         -3022.0730   6064.1460 - 0.0000   6064.4892 - 0.0000   6108.9465 - 0.0000
mtZOA+I          -3024.6533   6069.3066 - 0.0000   6069.6498 - 0.0000   6114.1071 - 0.0000
mtZOA+I+G4       -3021.9540   6065.9080 - 0.0000   6066.3205 - 0.0000   6115.1885 - 0.0000
mtZOA+R2         -3022.7226   6067.4453 - 0.0000   6067.8578 - 0.0000   6116.7257 - 0.0000
HIVw             -3033.8947   6085.7893 - 0.0000   6086.0697 - 0.0000   6126.1097 - 0.0000
mtZOA+R3         -3022.7153   6071.4306 - 0.0000   6072.0011 - 0.0000   6129.6712 - 0.0000
HIVw+F           -2975.1692   6006.3385 - 0.0000   6008.9452 - 0.0000   6131.7797 - 0.0000
mtREV+I          -3037.5852   6095.1703 - 0.0000   6095.5136 - 0.0000   6139.9708 - 0.0000
mtREV+G4         -3037.6207   6095.2415 - 0.0000   6095.5847 - 0.0000   6140.0419 - 0.0000
mtREV+I+G4       -3036.8453   6095.6907 - 0.0000   6096.1032 - 0.0000   6144.9712 - 0.0000
mtREV+R2         -3036.9788   6095.9577 - 0.0000   6096.3702 - 0.0000   6145.2382 - 0.0000
mtREV+R3         -3036.9677   6099.9354 - 0.0000   6100.5060 - 0.0000   6158.1760 - 0.0000
mtZOA            -3050.8644   6119.7287 - 0.0000   6120.0091 - 0.0000   6160.0491 - 0.0000
mtREV            -3060.5518   6139.1037 - 0.0000   6139.3841 - 0.0000   6179.4241 - 0.0000
mtART+G4         -3061.8628   6143.7256 - 0.0000   6144.0688 - 0.0000   6188.5261 - 0.0000
mtART+I+G4       -3061.9575   6145.9150 - 0.0000   6146.3275 - 0.0000   6195.1955 - 0.0000
mtART+R2         -3064.2290   6150.4580 - 0.0000   6150.8705 - 0.0000   6199.7385 - 0.0000
mtVer+I          -3067.5622   6155.1245 - 0.0000   6155.4677 - 0.0000   6199.9249 - 0.0000
mtMAM+G4         -3067.6907   6155.3814 - 0.0000   6155.7246 - 0.0000   6200.1819 - 0.0000
mtVer+G4         -3067.8253   6155.6506 - 0.0000   6155.9938 - 0.0000   6200.4511 - 0.0000
mtART+I          -3069.0511   6158.1023 - 0.0000   6158.4455 - 0.0000   6202.9027 - 0.0000
mtMet+I          -3069.2632   6158.5263 - 0.0000   6158.8695 - 0.0000   6203.3268 - 0.0000
mtVer+I+G4       -3066.8073   6155.6147 - 0.0000   6156.0272 - 0.0000   6204.8952 - 0.0000
mtMAM+I+G4       -3067.1167   6156.2335 - 0.0000   6156.6460 - 0.0000   6205.5140 - 0.0000
mtMet+G4         -3070.4623   6160.9247 - 0.0000   6161.2679 - 0.0000   6205.7251 - 0.0000
mtMAM+I          -3071.7700   6163.5401 - 0.0000   6163.8833 - 0.0000   6208.3405 - 0.0000
mtVer+R2         -3068.7585   6159.5171 - 0.0000   6159.9296 - 0.0000   6208.7975 - 0.0000
mtMAM+R2         -3068.9001   6159.8001 - 0.0000   6160.2126 - 0.0000   6209.0806 - 0.0000
mtMet+I+G4       -3069.2541   6160.5082 - 0.0000   6160.9207 - 0.0000   6209.7887 - 0.0000
mtART+R3         -3064.2165   6154.4331 - 0.0000   6155.0036 - 0.0000   6212.6737 - 0.0000
mtMet+R2         -3073.3953   6168.7906 - 0.0000   6169.2031 - 0.0000   6218.0711 - 0.0000
mtVer+R3         -3068.4202   6162.8405 - 0.0000   6163.4110 - 0.0000   6221.0811 - 0.0000
mtMAM+R3         -3068.8920   6163.7839 - 0.0000   6164.3545 - 0.0000   6222.0245 - 0.0000
mtMet+R3         -3073.3236   6172.6472 - 0.0000   6173.2177 - 0.0000   6230.8878 - 0.0000
mtMet            -3089.4003   6196.8006 - 0.0000   6197.0809 - 0.0000   6237.1210 - 0.0000
mtVer            -3093.6277   6205.2555 - 0.0000   6205.5359 - 0.0000   6245.5759 - 0.0000
mtInv+I          -3102.8909   6225.7817 - 0.0000   6226.1250 - 0.0000   6270.5822 - 0.0000
mtInv+G4         -3104.5942   6229.1883 - 0.0000   6229.5315 - 0.0000   6273.9888 - 0.0000
mtInv+I+G4       -3103.1109   6228.2218 - 0.0000   6228.6343 - 0.0000   6277.5023 - 0.0000
mtInv+R2         -3104.2427   6230.4855 - 0.0000   6230.8980 - 0.0000   6279.7660 - 0.0000
mtART            -3110.9888   6239.9775 - 0.0000   6240.2579 - 0.0000   6280.2979 - 0.0000
mtMAM            -3114.0346   6246.0691 - 0.0000   6246.3495 - 0.0000   6286.3895 - 0.0000
mtInv+R3         -3104.1113   6234.2226 - 0.0000   6234.7931 - 0.0000   6292.4632 - 0.0000
mtInv            -3118.8173   6255.6347 - 0.0000   6255.9150 - 0.0000   6295.9551 - 0.0000

AIC, w-AIC   : Akaike information criterion scores and weights.
AICc, w-AICc : Corrected AIC scores and weights.
BIC, w-BIC   : Bayesian information criterion scores and weights.

Plus signs denote the 95% confidence sets.
Minus signs denote significant exclusion.

SUBSTITUTION PROCESS
--------------------

Model of substitution: LG+I

State frequencies: (model)

Model of rate heterogeneity: Invar
Proportion of invariable sites: 0.3484

 Category  Relative_rate  Proportion
  0         0              0.3484
  1         1.5347         0.6516

MAXIMUM LIKELIHOOD TREE
-----------------------

Log-likelihood of the tree: -2844.5349 (s.e. 65.9976)
Unconstrained log-likelihood (without tree): -3309.1918
Number of free parameters (#branches + #model parameters): 10
Akaike information criterion (AIC) score: 5709.0698
Corrected Akaike information criterion (AICc) score: 5709.4131
Bayesian information criterion (BIC) score: 5753.8703

Total tree length (sum of branch lengths): 1.0521
Sum of internal branch lengths: 0.0215 (2.0465% of tree length)

WARNING: 1 near-zero internal branches (<0.0015) should be treated with caution
         Such branches are denoted by '**' in the figure below

NOTE: Tree is UNROOTED although outgroup taxon 'HYAP_01511' is drawn at root

+-----------------------------------------------------------HYAP_01511
|
|  +-----PYAR_14487
+--|
|  +--PHYKE_6984
|
|     +--PHYRA_72415
|  +--|
|  |  +--PHYCA_532912
+**|
   +--PHYSO_480010

Tree in newick format:

(HYAP_01511:0.8658817146,(PYAR_14487:0.0906388283,PHYKE_6984:0.0044799299):0.0114900583,((PHYRA_72415:0.0262075026,PHYCA_532912:0.0300611433):0.0100384393,PHYSO_480010:0.0132825175):0.0000020914);

TIME STAMP
----------

Date and time: Wed Dec  8 06:23:29 2021
Total CPU time used: 0.909503 seconds (0h:0m:0s)
Total wall-clock time used: 0.457386 seconds (0h:0m:0s)