Newick Format
(CCA17542:0.0713077032,CCI44820:0.2188620493,((PYAP_17747:0.2589001046,((PYU1_G001736:0.1474868869,((SPRG_06335:0.0227680641,SDRG_01782:0.0471776786):0.1589790224,(H257_06293:0.0835142971,H310_09224:0.1467873526):0.4352240921):0.6485934670):0.0693391043,(PYIR_13454:0.0485699610,PYIW_19970:0.1066505599):0.1390856839):0.1775797576):0.0866725833,(PYVX_18180:0.1811523116,(((HYAP_07103:0.1816655958,PHYKE_8392:0.1201295637):0.0000025437,(((PHALS_06479:0.1197023182,PHYCA_11834:0.0816523544):0.0200580523,(PITG_18455:0.0469862832,PPTG_17126:0.0552882213):0.0235391301):0.0304005505,PHYSO_321155:0.0444891959):0.0164479043):0.0679407537,PHYRA_95903:0.0361824096):0.1958835073):0.0991618478):0.5777591141);

Protein sequences → MUSCLE → trimAl (automated1) → IQ-TREE (Automatic model selection using ModelFinder)

Root the phylogeny or hide taxa by clicking on nodes

Phylogeny (unrooted) rendered using phylotree.js

Reconstruct this phylogeny using PHYLIP Neighbor, FastTree, IQ-TREE (+ ModelFinder) or PhyML?


IQ-TREE Log
IQ-TREE 1.6.11 built Jun  6 2019

Input file name: seq.aln-trimal
Type of analysis: ModelFinder + tree reconstruction
Random seed number: 322421

REFERENCES
----------

To cite ModelFinder please use: 

Subha Kalyaanamoorthy, Bui Quang Minh, Thomas KF Wong, Arndt von Haeseler,
and Lars S Jermiin (2017) ModelFinder: Fast model selection for
accurate phylogenetic estimates. Nature Methods, 14:587–589.
https://doi.org/10.1038/nmeth.4285

To cite IQ-TREE please use:

Lam-Tung Nguyen, Heiko A. Schmidt, Arndt von Haeseler, and Bui Quang Minh
(2015) IQ-TREE: A fast and effective stochastic algorithm for estimating
maximum likelihood phylogenies. Mol Biol Evol, 32:268-274.
https://doi.org/10.1093/molbev/msu300

SEQUENCE ALIGNMENT
------------------

Input data: 19 sequences with 135 amino-acid sites
Number of constant sites: 29 (= 21.4815% of all sites)
Number of invariant (constant or ambiguous constant) sites: 29 (= 21.4815% of all sites)
Number of parsimony informative sites: 88
Number of distinct site patterns: 122

ModelFinder
-----------

Best-fit model according to BIC: LG+G4

List of models sorted by BIC scores: 

Model             LogL          AIC      w-AIC      AICc     w-AICc       BIC      w-BIC
LG+G4            -2466.2456   5004.4911 + 0.2558   5031.6748 + 0.5398   5109.0810 + 0.6783
LG+I+G4          -2464.5614   5003.1229 + 0.5070   5032.1126 + 0.4337   5110.6180 + 0.3145
LG+R3            -2463.4522   5004.9045 + 0.2080   5037.7466 - 0.0259   5118.2102 - 0.0071
LG+R2            -2473.1083   5020.2166 - 0.0001   5049.2063 - 0.0001   5127.7117 - 0.0001
LG+R4            -2463.4196   5008.8391 - 0.0291   5045.8714 - 0.0004   5127.9554 - 0.0001
WAG+G4           -2478.3652   5028.7303 - 0.0000   5055.9140 - 0.0000   5133.3202 - 0.0000
WAG+I+G4         -2476.2640   5026.5280 - 0.0000   5055.5177 - 0.0000   5134.0231 - 0.0000
WAG+R3           -2475.9979   5029.9958 - 0.0000   5062.8379 - 0.0000   5143.3015 - 0.0000
WAG+R2           -2483.2414   5040.4827 - 0.0000   5069.4724 - 0.0000   5147.9779 - 0.0000
JTTDCMut+G4      -2486.2688   5044.5375 - 0.0000   5071.7212 - 0.0000   5149.1274 - 0.0000
JTT+G4           -2486.5952   5045.1904 - 0.0000   5072.3741 - 0.0000   5149.7803 - 0.0000
JTTDCMut+I+G4    -2484.1540   5042.3079 - 0.0000   5071.2976 - 0.0000   5149.8031 - 0.0000
JTT+I+G4         -2484.5679   5043.1358 - 0.0000   5072.1255 - 0.0000   5150.6310 - 0.0000
WAG+R4           -2475.9937   5033.9874 - 0.0000   5071.0197 - 0.0000   5153.1037 - 0.0000
JTTDCMut+R3      -2482.8847   5043.7694 - 0.0000   5076.6115 - 0.0000   5157.0752 - 0.0000
JTT+R3           -2483.0898   5044.1797 - 0.0000   5077.0218 - 0.0000   5157.4854 - 0.0000
LG+I             -2492.0346   5056.0693 - 0.0000   5083.2530 - 0.0000   5160.6592 - 0.0000
VT+G4            -2493.2271   5058.4542 - 0.0000   5085.6379 - 0.0000   5163.0441 - 0.0000
VT+I+G4          -2491.0530   5056.1060 - 0.0000   5085.0957 - 0.0000   5163.6012 - 0.0000
Dayhoff+G4       -2494.1658   5060.3317 - 0.0000   5087.5154 - 0.0000   5164.9216 - 0.0000
DCMut+G4         -2494.3002   5060.6003 - 0.0000   5087.7840 - 0.0000   5165.1902 - 0.0000
Dayhoff+I+G4     -2492.1232   5058.2463 - 0.0000   5087.2360 - 0.0000   5165.7415 - 0.0000
DCMut+I+G4       -2492.2454   5058.4909 - 0.0000   5087.4806 - 0.0000   5165.9861 - 0.0000
JTTDCMut+R2      -2492.6234   5059.2467 - 0.0000   5088.2364 - 0.0000   5166.7419 - 0.0000
JTTDCMut+R4      -2482.8820   5047.7639 - 0.0000   5084.7962 - 0.0000   5166.8802 - 0.0000
JTT+R4           -2483.0898   5048.1795 - 0.0000   5085.2118 - 0.0000   5167.2958 - 0.0000
JTT+R2           -2493.0554   5060.1107 - 0.0000   5089.1004 - 0.0000   5167.6059 - 0.0000
rtREV+G4         -2495.5361   5063.0723 - 0.0000   5090.2560 - 0.0000   5167.6622 - 0.0000
rtREV+I+G4       -2493.9688   5061.9375 - 0.0000   5090.9272 - 0.0000   5169.4327 - 0.0000
VT+R3            -2490.4278   5058.8556 - 0.0000   5091.6977 - 0.0000   5172.1613 - 0.0000
Dayhoff+R3       -2490.8958   5059.7916 - 0.0000   5092.6337 - 0.0000   5173.0973 - 0.0000
WAG+I            -2498.3068   5068.6135 - 0.0000   5095.7972 - 0.0000   5173.2034 - 0.0000
DCMut+R3         -2491.0236   5060.0473 - 0.0000   5092.8894 - 0.0000   5173.3530 - 0.0000
rtREV+R3         -2492.3519   5062.7038 - 0.0000   5095.5459 - 0.0000   5176.0096 - 0.0000
VT+R2            -2497.5396   5069.0792 - 0.0000   5098.0689 - 0.0000   5176.5743 - 0.0000
VT+R4            -2490.4236   5062.8473 - 0.0000   5099.8796 - 0.0000   5181.9636 - 0.0000
Dayhoff+R4       -2490.7536   5063.5072 - 0.0000   5100.5394 - 0.0000   5182.6234 - 0.0000
DCMut+R4         -2491.0175   5064.0351 - 0.0000   5101.0673 - 0.0000   5183.1513 - 0.0000
Dayhoff+R2       -2501.0150   5076.0300 - 0.0000   5105.0197 - 0.0000   5183.5252 - 0.0000
DCMut+R2         -2501.1241   5076.2482 - 0.0000   5105.2379 - 0.0000   5183.7433 - 0.0000
rtREV+R4         -2492.3492   5066.6984 - 0.0000   5103.7307 - 0.0000   5185.8147 - 0.0000
rtREV+R2         -2502.4876   5078.9752 - 0.0000   5107.9649 - 0.0000   5186.4704 - 0.0000
cpREV+G4         -2506.7905   5085.5811 - 0.0000   5112.7648 - 0.0000   5190.1710 - 0.0000
JTTDCMut+I       -2508.3979   5088.7959 - 0.0000   5115.9795 - 0.0000   5193.3858 - 0.0000
cpREV+I+G4       -2505.9607   5085.9214 - 0.0000   5114.9110 - 0.0000   5193.4165 - 0.0000
JTT+I            -2508.5985   5089.1969 - 0.0000   5116.3806 - 0.0000   5193.7868 - 0.0000
VT+I             -2510.8263   5093.6526 - 0.0000   5120.8363 - 0.0000   5198.2425 - 0.0000
cpREV+R3         -2506.2076   5090.4152 - 0.0000   5123.2573 - 0.0000   5203.7209 - 0.0000
cpREV+R2         -2513.3840   5100.7681 - 0.0000   5129.7577 - 0.0000   5208.2632 - 0.0000
Dayhoff+I        -2516.6982   5105.3964 - 0.0000   5132.5801 - 0.0000   5209.9863 - 0.0000
DCMut+I          -2516.7143   5105.4286 - 0.0000   5132.6122 - 0.0000   5210.0185 - 0.0000
cpREV+R4         -2506.1926   5094.3852 - 0.0000   5131.4174 - 0.0000   5213.5014 - 0.0000
Blosum62+G4      -2520.4202   5112.8405 - 0.0000   5140.0242 - 0.0000   5217.4304 - 0.0000
Blosum62+I+G4    -2518.7549   5111.5098 - 0.0000   5140.4995 - 0.0000   5219.0049 - 0.0000
LG+F+G4          -2476.1911   5062.3823 - 0.0000   5140.3570 - 0.0000   5222.1724 - 0.0000
LG+F+I+G4        -2474.0278   5060.0556 - 0.0000   5141.9017 - 0.0000   5222.7510 - 0.0000
rtREV+I          -2523.4371   5118.8743 - 0.0000   5146.0579 - 0.0000   5223.4642 - 0.0000
PMB+G4           -2525.5657   5123.1315 - 0.0000   5150.3152 - 0.0000   5227.7214 - 0.0000
Blosum62+R3      -2518.2435   5114.4871 - 0.0000   5147.3292 - 0.0000   5227.7928 - 0.0000
PMB+I+G4         -2523.7325   5121.4650 - 0.0000   5150.4547 - 0.0000   5228.9602 - 0.0000
Blosum62+R2      -2523.8774   5121.7548 - 0.0000   5150.7444 - 0.0000   5229.2499 - 0.0000
LG+F+R3          -2473.7904   5063.5808 - 0.0000   5153.6334 - 0.0000   5232.0868 - 0.0000
Blosum62+R4      -2518.2339   5118.4678 - 0.0000   5155.5001 - 0.0000   5237.5841 - 0.0000
PMB+R3           -2523.3519   5124.7038 - 0.0000   5157.5459 - 0.0000   5238.0095 - 0.0000
LG               -2533.4480   5136.8960 - 0.0000   5162.3505 - 0.0000   5238.5806 - 0.0000
PMB+R2           -2529.6396   5133.2792 - 0.0000   5162.2688 - 0.0000   5240.7743 - 0.0000
LG+F+R4          -2473.7848   5067.5696 - 0.0000   5166.4885 - 0.0000   5241.8861 - 0.0000
LG+F+R2          -2483.9550   5079.9100 - 0.0000   5161.7562 - 0.0000   5242.6054 - 0.0000
WAG              -2537.0122   5144.0244 - 0.0000   5169.4790 - 0.0000   5245.7090 - 0.0000
PMB+R4           -2523.3353   5128.6706 - 0.0000   5165.7029 - 0.0000   5247.7869 - 0.0000
FLU+G4           -2536.1731   5144.3461 - 0.0000   5171.5298 - 0.0000   5248.9360 - 0.0000
FLU+I+G4         -2534.1595   5142.3190 - 0.0000   5171.3087 - 0.0000   5249.8142 - 0.0000
Dayhoff+F+G4     -2490.5343   5091.0686 - 0.0000   5169.0432 - 0.0000   5250.8587 - 0.0000
DCMut+F+G4       -2490.6242   5091.2483 - 0.0000   5169.2230 - 0.0000   5251.0384 - 0.0000
Dayhoff+F+I+G4   -2488.2567   5088.5133 - 0.0000   5170.3595 - 0.0000   5251.2087 - 0.0000
DCMut+F+I+G4     -2488.3306   5088.6611 - 0.0000   5170.5073 - 0.0000   5251.3565 - 0.0000
HIVb+G4          -2538.7455   5149.4911 - 0.0000   5176.6748 - 0.0000   5254.0810 - 0.0000
rtREV+F+G4       -2492.3406   5094.6811 - 0.0000   5172.6558 - 0.0000   5254.4712 - 0.0000
HIVb+I+G4        -2536.8262   5147.6524 - 0.0000   5176.6421 - 0.0000   5255.1476 - 0.0000
rtREV+F+I+G4     -2490.5388   5093.0777 - 0.0000   5174.9238 - 0.0000   5255.7731 - 0.0000
cpREV+I          -2539.5969   5151.1938 - 0.0000   5178.3775 - 0.0000   5255.7837 - 0.0000
FLU+R3           -2532.4293   5142.8587 - 0.0000   5175.7008 - 0.0000   5256.1644 - 0.0000
JTT+F+I+G4       -2490.8220   5093.6441 - 0.0000   5175.4902 - 0.0000   5256.3395 - 0.0000
JTT+F+G4         -2493.3750   5096.7500 - 0.0000   5174.7247 - 0.0000   5256.5401 - 0.0000
JTTDCMut+F+I+G4  -2490.9489   5093.8978 - 0.0000   5175.7439 - 0.0000   5256.5932 - 0.0000
JTTDCMut+F+G4    -2493.5061   5097.0123 - 0.0000   5174.9870 - 0.0000   5256.8024 - 0.0000
WAG+F+G4         -2494.0863   5098.1726 - 0.0000   5176.1473 - 0.0000   5257.9627 - 0.0000
WAG+F+I+G4       -2491.7553   5095.5107 - 0.0000   5177.3568 - 0.0000   5258.2061 - 0.0000
Dayhoff+F+R3     -2487.2016   5090.4033 - 0.0000   5180.4559 - 0.0000   5258.9092 - 0.0000
DCMut+F+R3       -2487.2948   5090.5896 - 0.0000   5180.6422 - 0.0000   5259.0955 - 0.0000
Blosum62+I       -2541.6918   5155.3836 - 0.0000   5182.5673 - 0.0000   5259.9735 - 0.0000
HIVb+R3          -2535.3827   5148.7654 - 0.0000   5181.6075 - 0.0000   5262.0711 - 0.0000
rtREV+F+R3       -2490.2118   5096.4236 - 0.0000   5186.4762 - 0.0000   5264.9295 - 0.0000
mtZOA+F+G4       -2497.5920   5105.1839 - 0.0000   5183.1586 - 0.0000   5264.9740 - 0.0000
JTT+F+R3         -2490.4021   5096.8041 - 0.0000   5186.8568 - 0.0000   5265.3101 - 0.0000
JTTDCMut+F+R3    -2490.6580   5097.3159 - 0.0000   5187.3686 - 0.0000   5265.8219 - 0.0000
FLU+R4           -2532.4171   5146.8341 - 0.0000   5183.8664 - 0.0000   5265.9504 - 0.0000
WAG+F+R3         -2491.9529   5099.9057 - 0.0000   5189.9584 - 0.0000   5268.4117 - 0.0000
Dayhoff+F+R4     -2487.0588   5094.1176 - 0.0000   5193.0365 - 0.0000   5268.4341 - 0.0000
mtZOA+F+I+G4     -2496.9286   5105.8572 - 0.0000   5187.7034 - 0.0000   5268.5526 - 0.0000
DCMut+F+R4       -2487.2863   5094.5726 - 0.0000   5193.4915 - 0.0000   5268.8891 - 0.0000
PMB+I            -2546.1829   5164.3658 - 0.0000   5191.5495 - 0.0000   5268.9557 - 0.0000
FLU+R2           -2544.1743   5162.3486 - 0.0000   5191.3383 - 0.0000   5269.8438 - 0.0000
VT               -2549.8396   5169.6793 - 0.0000   5195.1338 - 0.0000   5271.3639 - 0.0000
Dayhoff+F+R2     -2498.3443   5108.6886 - 0.0000   5190.5347 - 0.0000   5271.3840 - 0.0000
DCMut+F+R2       -2498.4442   5108.8884 - 0.0000   5190.7346 - 0.0000   5271.5838 - 0.0000
mtInv+F+G4       -2500.9315   5111.8630 - 0.0000   5189.8377 - 0.0000   5271.6532 - 0.0000
HIVb+R4          -2535.3785   5152.7570 - 0.0000   5189.7893 - 0.0000   5271.8733 - 0.0000
mtInv+F+I+G4     -2499.6055   5111.2110 - 0.0000   5193.0572 - 0.0000   5273.9064 - 0.0000
rtREV+F+R2       -2499.7309   5111.4617 - 0.0000   5193.3079 - 0.0000   5274.1571 - 0.0000
LG+F+I           -2502.2552   5114.5103 - 0.0000   5192.4850 - 0.0000   5274.3004 - 0.0000
JTTDCMut         -2551.3448   5172.6895 - 0.0000   5198.1440 - 0.0000   5274.3741 - 0.0000
rtREV+F+R4       -2490.2070   5100.4140 - 0.0000   5199.3329 - 0.0000   5274.7305 - 0.0000
JTT+F+R4         -2490.3881   5100.7762 - 0.0000   5199.6951 - 0.0000   5275.0927 - 0.0000
JTT              -2551.7571   5173.5143 - 0.0000   5198.9688 - 0.0000   5275.1989 - 0.0000
WAG+F+R2         -2500.3453   5112.6906 - 0.0000   5194.5367 - 0.0000   5275.3859 - 0.0000
JTTDCMut+F+R4    -2490.6359   5101.2719 - 0.0000   5200.1908 - 0.0000   5275.5884 - 0.0000
mtZOA+F+R3       -2495.9999   5107.9999 - 0.0000   5198.0525 - 0.0000   5276.5058 - 0.0000
JTT+F+R2         -2501.1261   5114.2521 - 0.0000   5196.0983 - 0.0000   5276.9475 - 0.0000
VT+F+I+G4        -2501.1538   5114.3076 - 0.0000   5196.1538 - 0.0000   5277.0030 - 0.0000
JTTDCMut+F+R2    -2501.1739   5114.3478 - 0.0000   5196.1939 - 0.0000   5277.0432 - 0.0000
VT+F+G4          -2503.7629   5117.5257 - 0.0000   5195.5004 - 0.0000   5277.3158 - 0.0000
WAG+F+R4         -2491.9464   5103.8927 - 0.0000   5202.8117 - 0.0000   5278.2092 - 0.0000
Dayhoff          -2554.4747   5178.9495 - 0.0000   5204.4040 - 0.0000   5280.6341 - 0.0000
DCMut            -2554.4835   5178.9670 - 0.0000   5204.4215 - 0.0000   5280.6516 - 0.0000
mtInv+F+R3       -2498.5137   5113.0274 - 0.0000   5203.0800 - 0.0000   5281.5333 - 0.0000
HIVb+R2          -2552.1187   5178.2373 - 0.0000   5207.2270 - 0.0000   5285.7325 - 0.0000
mtZOA+F+R4       -2495.9841   5111.9682 - 0.0000   5210.8872 - 0.0000   5286.2847 - 0.0000
VT+F+R3          -2501.1461   5118.2922 - 0.0000   5208.3449 - 0.0000   5286.7982 - 0.0000
mtZOA+F+R2       -2507.2274   5126.4547 - 0.0000   5208.3009 - 0.0000   5289.1501 - 0.0000
mtInv+F+R4       -2498.5062   5117.0125 - 0.0000   5215.9314 - 0.0000   5291.3290 - 0.0000
mtMet+F+G4       -2510.9896   5131.9792 - 0.0000   5209.9539 - 0.0000   5291.7693 - 0.0000
VT+F+R2          -2508.8562   5129.7124 - 0.0000   5211.5586 - 0.0000   5292.4078 - 0.0000
mtInv+F+R2       -2509.3255   5130.6510 - 0.0000   5212.4971 - 0.0000   5293.3464 - 0.0000
mtMet+F+I+G4     -2509.6013   5131.2025 - 0.0000   5213.0487 - 0.0000   5293.8979 - 0.0000
DCMut+F+I        -2513.0111   5136.0223 - 0.0000   5213.9970 - 0.0000   5295.8124 - 0.0000
Dayhoff+F+I      -2513.0307   5136.0615 - 0.0000   5214.0361 - 0.0000   5295.8516 - 0.0000
VT+F+R4          -2501.1066   5122.2131 - 0.0000   5221.1320 - 0.0000   5296.5296 - 0.0000
mtMet+F+R3       -2508.0718   5132.1435 - 0.0000   5222.1962 - 0.0000   5300.6495 - 0.0000
rtREV            -2564.7596   5199.5192 - 0.0000   5224.9738 - 0.0000   5301.2038 - 0.0000
JTT+F+I          -2516.4839   5142.9679 - 0.0000   5220.9426 - 0.0000   5302.7580 - 0.0000
JTTDCMut+F+I     -2516.7201   5143.4402 - 0.0000   5221.4148 - 0.0000   5303.2303 - 0.0000
WAG+F+I          -2516.8822   5143.7643 - 0.0000   5221.7390 - 0.0000   5303.5544 - 0.0000
cpREV+F+G4       -2518.7147   5147.4295 - 0.0000   5225.4041 - 0.0000   5307.2196 - 0.0000
cpREV+F+I+G4     -2517.4306   5146.8611 - 0.0000   5228.7073 - 0.0000   5309.5565 - 0.0000
mtMet+F+R4       -2508.0638   5136.1276 - 0.0000   5235.0465 - 0.0000   5310.4441 - 0.0000
rtREV+F+I        -2520.7583   5151.5166 - 0.0000   5229.4913 - 0.0000   5311.3068 - 0.0000
VT+F+I           -2522.2573   5154.5147 - 0.0000   5232.4894 - 0.0000   5314.3048 - 0.0000
mtART+F+G4       -2522.8030   5155.6060 - 0.0000   5233.5807 - 0.0000   5315.3961 - 0.0000
mtMet+F+R2       -2521.3681   5154.7362 - 0.0000   5236.5824 - 0.0000   5317.4316 - 0.0000
mtART+F+I+G4     -2522.5136   5157.0273 - 0.0000   5238.8734 - 0.0000   5319.7226 - 0.0000
cpREV+F+R3       -2518.1131   5152.2263 - 0.0000   5242.2789 - 0.0000   5320.7322 - 0.0000
cpREV            -2574.9364   5219.8728 - 0.0000   5245.3273 - 0.0000   5321.5574 - 0.0000
FLU+I            -2572.8039   5217.6078 - 0.0000   5244.7915 - 0.0000   5322.1977 - 0.0000
Blosum62+F+G4    -2528.0512   5166.1025 - 0.0000   5244.0772 - 0.0000   5325.8926 - 0.0000
Blosum62+F+I+G4  -2525.9763   5163.9525 - 0.0000   5245.7987 - 0.0000   5326.6479 - 0.0000
FLU+F+I+G4       -2526.1019   5164.2039 - 0.0000   5246.0501 - 0.0000   5326.8993 - 0.0000
FLU+F+G4         -2528.5929   5167.1858 - 0.0000   5245.1605 - 0.0000   5326.9759 - 0.0000
cpREV+F+R2       -2526.2579   5164.5158 - 0.0000   5246.3619 - 0.0000   5327.2112 - 0.0000
mtInv+F+I        -2529.0781   5168.1562 - 0.0000   5246.1309 - 0.0000   5327.9463 - 0.0000
mtART+F+R3       -2521.8467   5159.6935 - 0.0000   5249.7461 - 0.0000   5328.1994 - 0.0000
Blosum62         -2578.3785   5226.7570 - 0.0000   5252.2115 - 0.0000   5328.4416 - 0.0000
PMB+F+G4         -2529.3893   5168.7785 - 0.0000   5246.7532 - 0.0000   5328.5686 - 0.0000
PMB+F+I+G4       -2527.2316   5166.4633 - 0.0000   5248.3094 - 0.0000   5329.1587 - 0.0000
HIVb+F+G4        -2530.2493   5170.4985 - 0.0000   5248.4732 - 0.0000   5330.2886 - 0.0000
cpREV+F+R4       -2518.0886   5156.1773 - 0.0000   5255.0962 - 0.0000   5330.4938 - 0.0000
HIVb+F+I+G4      -2528.0920   5168.1840 - 0.0000   5250.0302 - 0.0000   5330.8794 - 0.0000
mtREV+F+G4       -2531.0205   5172.0410 - 0.0000   5250.0156 - 0.0000   5331.8311 - 0.0000
mtREV+F+I+G4     -2530.0128   5172.0257 - 0.0000   5253.8718 - 0.0000   5334.7211 - 0.0000
FLU+F+R3         -2525.9537   5167.9074 - 0.0000   5257.9600 - 0.0000   5336.4133 - 0.0000
Blosum62+F+R3    -2526.2223   5168.4446 - 0.0000   5258.4973 - 0.0000   5336.9506 - 0.0000
mtART+F+R4       -2521.8307   5163.6614 - 0.0000   5262.5803 - 0.0000   5337.9779 - 0.0000
PMB+F+R3         -2527.3472   5170.6943 - 0.0000   5260.7470 - 0.0000   5339.2003 - 0.0000
Blosum62+F+R2    -2532.3442   5176.6883 - 0.0000   5258.5345 - 0.0000   5339.3837 - 0.0000
PMB              -2584.6619   5239.3239 - 0.0000   5264.7784 - 0.0000   5341.0085 - 0.0000
HIVb+F+R3        -2528.7439   5173.4878 - 0.0000   5263.5404 - 0.0000   5341.9937 - 0.0000
PMB+F+R2         -2534.1921   5180.3841 - 0.0000   5262.2303 - 0.0000   5343.0795 - 0.0000
mtREV+F+R3       -2529.7677   5175.5354 - 0.0000   5265.5880 - 0.0000   5344.0413 - 0.0000
HIVb+I           -2584.1784   5240.3568 - 0.0000   5267.5405 - 0.0000   5344.9467 - 0.0000
FLU+F+R4         -2525.9527   5171.9055 - 0.0000   5270.8244 - 0.0000   5346.2220 - 0.0000
mtZOA+F+I        -2538.3764   5186.7528 - 0.0000   5264.7275 - 0.0000   5346.5429 - 0.0000
mtART+F+R2       -2535.9454   5183.8908 - 0.0000   5265.7370 - 0.0000   5346.5862 - 0.0000
Blosum62+F+R4    -2526.2148   5172.4297 - 0.0000   5271.3486 - 0.0000   5346.7462 - 0.0000
PMB+F+R4         -2527.3415   5174.6829 - 0.0000   5273.6018 - 0.0000   5348.9994 - 0.0000
HIVb+F+R4        -2528.7418   5177.4837 - 0.0000   5276.4026 - 0.0000   5351.8002 - 0.0000
FLU+F+R2         -2538.7594   5189.5188 - 0.0000   5271.3649 - 0.0000   5352.2141 - 0.0000
mtVer+F+G4       -2541.5050   5193.0100 - 0.0000   5270.9847 - 0.0000   5352.8001 - 0.0000
mtREV+F+R4       -2529.7156   5179.4312 - 0.0000   5278.3502 - 0.0000   5353.7477 - 0.0000
mtVer+F+I+G4     -2540.6591   5193.3182 - 0.0000   5275.1643 - 0.0000   5356.0136 - 0.0000
mtMet+F+I        -2543.2410   5196.4820 - 0.0000   5274.4567 - 0.0000   5356.2721 - 0.0000
mtREV+F+R2       -2540.8687   5193.7374 - 0.0000   5275.5836 - 0.0000   5356.4328 - 0.0000
LG+F             -2547.7332   5203.4663 - 0.0000   5277.7163 - 0.0000   5360.3512 - 0.0000
mtVer+F+R3       -2539.3011   5194.6023 - 0.0000   5284.6549 - 0.0000   5363.1082 - 0.0000
HIVb+F+R2        -2545.3294   5202.6588 - 0.0000   5284.5050 - 0.0000   5365.3542 - 0.0000
Blosum62+F+I     -2549.7399   5209.4797 - 0.0000   5287.4544 - 0.0000   5369.2698 - 0.0000
PMB+F+I          -2550.3002   5210.6005 - 0.0000   5288.5751 - 0.0000   5370.3906 - 0.0000
DCMut+F          -2553.5486   5215.0972 - 0.0000   5289.3472 - 0.0000   5371.9820 - 0.0000
Dayhoff+F        -2553.5960   5215.1920 - 0.0000   5289.4420 - 0.0000   5372.0768 - 0.0000
mtVer+F+R4       -2539.2919   5198.5838 - 0.0000   5297.5028 - 0.0000   5372.9003 - 0.0000
mtZOA+G4         -2598.8947   5269.7895 - 0.0000   5296.9731 - 0.0000   5374.3794 - 0.0000
mtZOA+I+G4       -2598.5845   5271.1689 - 0.0000   5300.1586 - 0.0000   5378.6641 - 0.0000
mtVer+F+R2       -2553.7731   5219.5462 - 0.0000   5301.3924 - 0.0000   5382.2416 - 0.0000
WAG+F            -2559.3910   5226.7819 - 0.0000   5301.0319 - 0.0000   5383.6668 - 0.0000
cpREV+F+I        -2557.4266   5224.8532 - 0.0000   5302.8279 - 0.0000   5384.6433 - 0.0000
mtZOA+R3         -2598.6416   5275.2833 - 0.0000   5308.1254 - 0.0000   5388.5890 - 0.0000
VT+F             -2564.4523   5236.9047 - 0.0000   5311.1547 - 0.0000   5393.7895 - 0.0000
JTTDCMut+F       -2564.6792   5237.3584 - 0.0000   5311.6084 - 0.0000   5394.2433 - 0.0000
rtREV+F          -2564.7115   5237.4231 - 0.0000   5311.6731 - 0.0000   5394.3079 - 0.0000
JTT+F            -2564.7668   5237.5336 - 0.0000   5311.7836 - 0.0000   5394.4184 - 0.0000
mtZOA+R4         -2598.6276   5279.2553 - 0.0000   5316.2875 - 0.0000   5398.3715 - 0.0000
mtInv+F          -2566.9933   5241.9866 - 0.0000   5316.2366 - 0.0000   5398.8715 - 0.0000
mtZOA+R2         -2611.4321   5296.8643 - 0.0000   5325.8539 - 0.0000   5404.3594 - 0.0000
mtREV+F+I        -2571.3860   5252.7719 - 0.0000   5330.7466 - 0.0000   5412.5620 - 0.0000
mtZOA+F          -2576.8044   5261.6087 - 0.0000   5335.8587 - 0.0000   5418.4936 - 0.0000
FLU+F+I          -2574.5601   5259.1202 - 0.0000   5337.0948 - 0.0000   5418.9103 - 0.0000
mtMAM+F+G4       -2574.9741   5259.9482 - 0.0000   5337.9229 - 0.0000   5419.7383 - 0.0000
mtMAM+F+I+G4     -2574.8945   5261.7890 - 0.0000   5343.6352 - 0.0000   5424.4844 - 0.0000
FLU              -2626.9417   5323.8834 - 0.0000   5349.3379 - 0.0000   5425.5680 - 0.0000
HIVb+F+I         -2581.2740   5272.5480 - 0.0000   5350.5227 - 0.0000   5432.3381 - 0.0000
mtMAM+F+R3       -2574.2494   5264.4989 - 0.0000   5354.5515 - 0.0000   5433.0048 - 0.0000
mtMet+F          -2584.0753   5276.1507 - 0.0000   5350.4007 - 0.0000   5433.0355 - 0.0000
mtVer+F+I        -2583.1073   5276.2145 - 0.0000   5354.1892 - 0.0000   5436.0046 - 0.0000
mtMAM+F+R4       -2572.0213   5264.0425 - 0.0000   5362.9615 - 0.0000   5438.3590 - 0.0000
mtART+F+I        -2586.7517   5283.5033 - 0.0000   5361.4780 - 0.0000   5443.2935 - 0.0000
Blosum62+F       -2589.2630   5286.5259 - 0.0000   5360.7759 - 0.0000   5443.4108 - 0.0000
PMB+F            -2591.2313   5290.4627 - 0.0000   5364.7127 - 0.0000   5447.3475 - 0.0000
mtMAM+F+R2       -2591.9040   5295.8080 - 0.0000   5377.6542 - 0.0000   5458.5034 - 0.0000
HIVb             -2644.0125   5358.0250 - 0.0000   5383.4795 - 0.0000   5459.7096 - 0.0000
mtMet+G4         -2642.4881   5356.9762 - 0.0000   5384.1599 - 0.0000   5461.5661 - 0.0000
cpREV+F          -2599.6187   5307.2375 - 0.0000   5381.4875 - 0.0000   5464.1223 - 0.0000
mtMet+I+G4       -2642.0051   5358.0102 - 0.0000   5386.9999 - 0.0000   5465.5054 - 0.0000
mtREV+G4         -2645.6641   5363.3283 - 0.0000   5390.5120 - 0.0000   5467.9182 - 0.0000
mtMet+R3         -2640.2416   5358.4833 - 0.0000   5391.3254 - 0.0000   5471.7890 - 0.0000
mtREV+I+G4       -2645.2210   5364.4420 - 0.0000   5393.4317 - 0.0000   5471.9372 - 0.0000
mtREV+R3         -2643.7489   5365.4978 - 0.0000   5398.3399 - 0.0000   5478.8035 - 0.0000
mtMet+R4         -2640.2384   5362.4768 - 0.0000   5399.5090 - 0.0000   5481.5930 - 0.0000
mtART+G4         -2654.8198   5381.6397 - 0.0000   5408.8233 - 0.0000   5486.2295 - 0.0000
mtREV+F          -2610.8868   5329.7735 - 0.0000   5404.0235 - 0.0000   5486.6583 - 0.0000
mtREV+R4         -2643.7308   5369.4616 - 0.0000   5406.4939 - 0.0000   5488.5779 - 0.0000
mtMet+R2         -2653.8813   5381.7625 - 0.0000   5410.7522 - 0.0000   5489.2577 - 0.0000
mtART+I+G4       -2654.9491   5383.8981 - 0.0000   5412.8878 - 0.0000   5491.3933 - 0.0000
HIVw+G4          -2659.1655   5390.3311 - 0.0000   5417.5147 - 0.0000   5494.9209 - 0.0000
mtVer+G4         -2659.6633   5391.3266 - 0.0000   5418.5103 - 0.0000   5495.9165 - 0.0000
HIVw+I+G4        -2657.7976   5389.5952 - 0.0000   5418.5849 - 0.0000   5497.0903 - 0.0000
mtInv+G4         -2660.9621   5393.9242 - 0.0000   5421.1078 - 0.0000   5498.5141 - 0.0000
mtREV+R2         -2658.9961   5391.9922 - 0.0000   5420.9819 - 0.0000   5499.4873 - 0.0000
HIVw+R3          -2654.4273   5386.8546 - 0.0000   5419.6967 - 0.0000   5500.1603 - 0.0000
mtVer+I+G4       -2659.6308   5393.2617 - 0.0000   5422.2514 - 0.0000   5500.7569 - 0.0000
mtInv+I+G4       -2660.2475   5394.4950 - 0.0000   5423.4847 - 0.0000   5501.9902 - 0.0000
mtART+R3         -2655.7587   5389.5175 - 0.0000   5422.3596 - 0.0000   5502.8232 - 0.0000
HIVw+F+G4        -2617.2612   5344.5223 - 0.0000   5422.4970 - 0.0000   5504.3124 - 0.0000
HIVw+F+I+G4      -2615.4803   5342.9606 - 0.0000   5424.8068 - 0.0000   5505.6560 - 0.0000
mtVer+R3         -2657.9318   5393.8635 - 0.0000   5426.7056 - 0.0000   5507.1692 - 0.0000
mtInv+R3         -2658.9299   5395.8597 - 0.0000   5428.7019 - 0.0000   5509.1655 - 0.0000
HIVw+R4          -2654.4237   5390.8474 - 0.0000   5427.8797 - 0.0000   5509.9637 - 0.0000
mtART+R4         -2655.7134   5393.4268 - 0.0000   5430.4590 - 0.0000   5512.5430 - 0.0000
HIVw+F+R3        -2614.1892   5344.3784 - 0.0000   5434.4311 - 0.0000   5512.8844 - 0.0000
mtZOA+I          -2670.0710   5412.1420 - 0.0000   5439.3257 - 0.0000   5516.7319 - 0.0000
mtVer+R4         -2657.9138   5397.8276 - 0.0000   5434.8599 - 0.0000   5516.9439 - 0.0000
mtVer+F          -2626.6948   5361.3895 - 0.0000   5435.6395 - 0.0000   5518.2744 - 0.0000
mtInv+R4         -2658.9249   5399.8497 - 0.0000   5436.8820 - 0.0000   5518.9660 - 0.0000
mtInv+R2         -2669.9585   5413.9170 - 0.0000   5442.9067 - 0.0000   5521.4122 - 0.0000
mtART+F          -2628.4962   5364.9924 - 0.0000   5439.2424 - 0.0000   5521.8773 - 0.0000
HIVw+F+R4        -2614.1861   5348.3722 - 0.0000   5447.2911 - 0.0000   5522.6887 - 0.0000
mtART+R2         -2673.0117   5420.0233 - 0.0000   5449.0130 - 0.0000   5527.5185 - 0.0000
HIVw+R2          -2674.7481   5423.4961 - 0.0000   5452.4858 - 0.0000   5530.9913 - 0.0000
mtVer+R2         -2675.7099   5425.4198 - 0.0000   5454.4095 - 0.0000   5532.9150 - 0.0000
FLU+F            -2639.2708   5386.5416 - 0.0000   5460.7916 - 0.0000   5543.4264 - 0.0000
HIVw+F+R2        -2634.5991   5381.1982 - 0.0000   5463.0444 - 0.0000   5543.8936 - 0.0000
HIVb+F           -2648.2191   5404.4382 - 0.0000   5478.6882 - 0.0000   5561.3230 - 0.0000
mtMAM+F+I        -2649.6818   5409.3636 - 0.0000   5487.3382 - 0.0000   5569.1537 - 0.0000
mtMet+I          -2697.9364   5467.8728 - 0.0000   5495.0565 - 0.0000   5572.4627 - 0.0000
mtMAM+G4         -2704.1788   5480.3576 - 0.0000   5507.5412 - 0.0000   5584.9475 - 0.0000
mtREV+I          -2705.7672   5483.5344 - 0.0000   5510.7181 - 0.0000   5588.1243 - 0.0000
HIVw+I           -2706.3427   5484.6853 - 0.0000   5511.8690 - 0.0000   5589.2752 - 0.0000
mtMAM+I+G4       -2704.6060   5483.2121 - 0.0000   5512.2017 - 0.0000   5590.7072 - 0.0000
mtInv+I          -2708.5694   5489.1387 - 0.0000   5516.3224 - 0.0000   5593.7286 - 0.0000
mtMAM+R3         -2703.1386   5484.2772 - 0.0000   5517.1193 - 0.0000   5597.5829 - 0.0000
mtZOA            -2713.0337   5496.0674 - 0.0000   5521.5219 - 0.0000   5597.7520 - 0.0000
mtMAM+R4         -2700.0392   5482.0784 - 0.0000   5519.1107 - 0.0000   5601.1947 - 0.0000
HIVw+F+I         -2668.7988   5447.5976 - 0.0000   5525.5723 - 0.0000   5607.3877 - 0.0000
mtMAM+R2         -2726.7469   5527.4937 - 0.0000   5556.4834 - 0.0000   5634.9889 - 0.0000
mtVer+I          -2729.9379   5531.8759 - 0.0000   5559.0596 - 0.0000   5636.4658 - 0.0000
mtMet            -2739.0394   5548.0789 - 0.0000   5573.5334 - 0.0000   5649.7635 - 0.0000
mtMAM+F          -2696.9910   5501.9820 - 0.0000   5576.2320 - 0.0000   5658.8668 - 0.0000
mtREV            -2746.3609   5562.7219 - 0.0000   5588.1764 - 0.0000   5664.4065 - 0.0000
mtInv            -2747.8675   5565.7351 - 0.0000   5591.1896 - 0.0000   5667.4197 - 0.0000
HIVw             -2763.2804   5596.5607 - 0.0000   5622.0153 - 0.0000   5698.2454 - 0.0000
mtART+I          -2761.0103   5594.0205 - 0.0000   5621.2042 - 0.0000   5698.6104 - 0.0000
mtVer            -2773.5116   5617.0232 - 0.0000   5642.4778 - 0.0000   5718.7079 - 0.0000
HIVw+F           -2733.4450   5574.8900 - 0.0000   5649.1400 - 0.0000   5731.7748 - 0.0000
mtART            -2811.9938   5693.9877 - 0.0000   5719.4422 - 0.0000   5795.6723 - 0.0000
mtMAM+I          -2823.9179   5719.8358 - 0.0000   5747.0194 - 0.0000   5824.4256 - 0.0000
mtMAM            -2872.9662   5815.9324 - 0.0000   5841.3869 - 0.0000   5917.6170 - 0.0000

AIC, w-AIC   : Akaike information criterion scores and weights.
AICc, w-AICc : Corrected AIC scores and weights.
BIC, w-BIC   : Bayesian information criterion scores and weights.

Plus signs denote the 95% confidence sets.
Minus signs denote significant exclusion.

SUBSTITUTION PROCESS
--------------------

Model of substitution: LG+G4

State frequencies: (model)

Model of rate heterogeneity: Gamma with 4 categories
Gamma shape alpha: 0.9973

 Category  Relative_rate  Proportion
  1         0.1364         0.2500
  2         0.4760         0.2500
  3         0.9996         0.2500
  4         2.3881         0.2500
Relative rates are computed as MEAN of the portion of the Gamma distribution falling in the category.

MAXIMUM LIKELIHOOD TREE
-----------------------

Log-likelihood of the tree: -2446.6744 (s.e. 132.1850)
Unconstrained log-likelihood (without tree): -639.8479
Number of free parameters (#branches + #model parameters): 36
Akaike information criterion (AIC) score: 4965.3487
Corrected Akaike information criterion (AICc) score: 4992.5324
Bayesian information criterion (BIC) score: 5069.9386

Total tree length (sum of branch lengths): 4.7659
Sum of internal branch lengths: 2.7467 (57.6312% of tree length)

WARNING: 1 near-zero internal branches (<0.0074) should be treated with caution
         Such branches are denoted by '**' in the figure below

NOTE: Tree is UNROOTED although outgroup taxon 'CCA17542' is drawn at root

+--CCA17542
|
+-----CCI44820
|
|                  +------PYAP_17747
|               +--|
|               |  |      +---PYU1_G001736
|               |  |   +--|
|               |  |   |  |                     +--SPRG_06335
|               |  |   |  |                 +---|
|               |  |   |  |                 |   +--SDRG_01782
|               |  |   |  +-----------------|
|               |  |   |                    |           +--H257_06293
|               |  |   |                    +-----------|
|               |  |   |                                +---H310_09224
|               |  +---|
|               |      |  +--PYIR_13454
|               |      +--|
|               |         +--PYIW_19970
+---------------|
                |  +----PYVX_18180
                +--|
                   |          +----HYAP_07103
                   |       +**|
                   |       |  +--PHYKE_8392
                   |    +--|
                   |    |  |        +--PHALS_06479
                   |    |  |     +--|
                   |    |  |     |  +--PHYCA_11834
                   |    |  |  +--|
                   |    |  |  |  |  +--PITG_18455
                   |    |  |  |  +--|
                   |    |  |  |     +--PPTG_17126
                   |    |  +--|
                   |    |     +--PHYSO_321155
                   +----|
                        +--PHYRA_95903

Tree in newick format:

(CCA17542:0.0713077032,CCI44820:0.2188620493,((PYAP_17747:0.2589001046,((PYU1_G001736:0.1474868869,((SPRG_06335:0.0227680641,SDRG_01782:0.0471776786):0.1589790224,(H257_06293:0.0835142971,H310_09224:0.1467873526):0.4352240921):0.6485934670):0.0693391043,(PYIR_13454:0.0485699610,PYIW_19970:0.1066505599):0.1390856839):0.1775797576):0.0866725833,(PYVX_18180:0.1811523116,(((HYAP_07103:0.1816655958,PHYKE_8392:0.1201295637):0.0000025437,(((PHALS_06479:0.1197023182,PHYCA_11834:0.0816523544):0.0200580523,(PITG_18455:0.0469862832,PPTG_17126:0.0552882213):0.0235391301):0.0304005505,PHYSO_321155:0.0444891959):0.0164479043):0.0679407537,PHYRA_95903:0.0361824096):0.1958835073):0.0991618478):0.5777591141);

TIME STAMP
----------

Date and time: Wed Dec  8 06:31:45 2021
Total CPU time used: 14.9436 seconds (0h:0m:14s)
Total wall-clock time used: 7.55166 seconds (0h:0m:7s)